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[178954_at]

Description F54B8.5 /REP_DB=WormBase Gene ID /WP=CE16107 /TR=O45563 /GB=CAB07627.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 04      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 19.7
(-1.2)
A 		4.7
(-3)
A 		18.1
(-1.4)
A 		56
(3)
A 		51
B 28.6
(-0.2)
A 		9
(-2.2)
A 		1.1
(-3)
A 		59.4
(3)
A 		58
C 41
(-1.2)
A 		20.3
(-3)
A 		35.6
(-1.7)
A 		90.3
(3)
A 		70
avr 29.8
(-1.1) 		11.3
(-3) 		18.3
(-2.3) 		68.6
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 12.4
(-1.5)
A 		5.5
(-3)
A 		11.9
(-1.6)
A 		31.5
(2.7)
A 		33
(3)
A 		7.1
(-2.7)
A 		28
B 25.6
(0.8)
A 		16.9
(-0.8)
A 		4.7
(-3)
A 		18.5
(-0.5)
A 		38
(3)
A 		7.5
(-2.5)
A 		33
C 28.2
(3)
A 		9
(-2.3)
A 		18.8
(0.4)
A 		8.2
(-2.5)
A 		12
(-1.4)
A 		6.3
(-3)
A 		22
avr 22.1
(1.4) 		10.5
(-2) 		11.8
(-1.6) 		19.4
(0.6) 		27.7
(3) 		7
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.2
(2.2)
A 		1
(-3)
A 		4.7
(0.1)
A 		8.2
(3)
A 		7
B 9.1
(1.3)
A 		2.2
(-2.1)
A 		0.3
(-3)
A 		12.7
(3)
A 		12
C 13.6
(2)
A 		5.8
(-3)
A 		12.4
(1.2)
A 		15.2
(3)
A 		9
avr 10
(1.7) 		3
(-3) 		5.8
(-1.1) 		12
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.3
(-2.6)
A 		2
(-2.8)
A 		2.6
(-2.3)
A 		8
(1.6)
A 		10
(3)
A 		1.7
(-3)
A 		8
B 8.9
(0.3)
A 		5.6
(-1.1)
A 		1.1
(-3)
A 		4.9
(-1.4)
A 		15.4
(3)
A 		2.8
(-2.3)
A 		14
C 10.5
(3)
A 		2.8
(-2.2)
A 		4.8
(-0.8)
A 		1.6
(-3)
A 		3.9
(-1.4)
A 		2.1
(-2.7)
A 		9
avr 7.2
(0.9) 		3.5
(-2) 		2.8
(-2.5) 		4.8
(-0.9) 		9.8
(3) 		2.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13805
Sequence Type Exemplar sequence
Representative Public ID F54B8.5 NCBI
Target Description F54B8.5 /REP_DB=WormBase Gene ID /WP=CE16107 /TR=O45563 /GB=CAB07627.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074549 NCBI Caenorhabditis elegans AntiBacterial Factor related family member (abf-3) (abf-3) mRNA, complete cds. 11/11 None
F54B8.5 ENSEMBL cdna:known chromosome:CEL140:V:15819994:15820430:-1 gene:F54B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15819993-15820430(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abf-3
Ensembl F54B8.5
Entrez Gene 186202 Entrez gene
SwissProt O45563 EMBL-EBI
WormBase CE16107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07627 Hypothetical protein F54B8.5 [Caenorhabditis elegans] ref|NP_506950.1| AntiBacterial Factor related family member (abf-3) [Caenorhabditis elegans] 2.0E-42
blast CAA90673 Hypothetical protein T22H6.5 [Caenorhabditis elegans] ref|NP_510136.1| AntiBacterial Factor related family member (abf-5) [Caenorhabditis elegans] dbj|BAC44992.1| ABF-5 [Caenorhabditis elegans] 7.0E-28
blast CAE57212 Hypothetical protein CBG00070 [Caenorhabditis briggsae] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:178954_AT
attttcgcttttcttattggcttgaacaaaggaagtgtttgtctgacgagaagaacagat
tggggtcagctcggtgctatatttacaaatcccgtttgtgatgtttggtgtcgaataagg
cagtgtggacctggtcaatgcaaagaagatccgatgacatccgatgaggctcaatgtgtc
tgtgaaaaatgctacagggatagctatggaaatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCGCTTTTCTTATTGGCTTGA 142 15 37 Antisense
AAAGGAAGTGTTTGTCTGACGAGAA 362 121 64 Antisense
AGAACAGATTGGGGTCAGCTCGGTG 119 73 88 Antisense
GGGGTCAGCTCGGTGCTATATTTAC 369 497 98 Antisense
GGTGCTATATTTACAAATCCCGTTT 558 499 109 Antisense
ACAAATCCCGTTTGTGATGTTTGGT 545 103 121 Antisense
GGTGTCGAATAAGGCAGTGTGGACC 85 501 143 Antisense
GGCAGTGTGGACCTGGTCAATGCAA 516 535 155 Antisense
GATCCGATGACATCCGATGAGGCTC 48 417 184 Antisense
GATGAGGCTCAATGTGTCTGTGAAA 474 411 199 Antisense
CTACAGGGATAGCTATGGAAATGCC 606 191 228 Antisense
Sequence Source Affymetrix Proprietary Database