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[178953_s_at]

Description B0001.2 /REP_DB=WormBase Gene ID /WP=CE05140 /TR=Q17411 /GB=CAA93451.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_high_8_8 > 03      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 123.8
(-0.2)
P 		80.4
(-3)
A 		124
(-0.2)
P 		174.3
(3)
P 		94
B 151.4
(3)
P 		99.5
(-2)
M 		88.6
(-3)
P 		135.1
(1.4)
P 		63
C 163.4
(0.1)
P 		117.4
(-3)
P 		146.6
(-1)
P 		206.3
(3)
P 		89
avr 146.2
(0.9) 		99.1
(-3) 		119.7
(-1.3) 		171.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 132.3
(-2.6)
P 		106.8
(-3)
P 		228.8
(-1.1)
P 		289.5
(-0.1)
P 		297
(0)
P 		482.6
(3)
P 		376
B 113.1
(-3)
P 		131.7
(-2.6)
P 		151.6
(-2.3)
P 		169.4
(-1.9)
P 		300.3
(0.6)
P 		421.1
(3)
P 		308
C 104.1
(-3)
P 		127.5
(-2.6)
P 		189.1
(-1.5)
P 		249
(-0.4)
P 		284.1
(0.2)
P 		440.9
(3)
P 		337
avr 116.5
(-3) 		122
(-2.9) 		189.8
(-1.7) 		236
(-0.8) 		293.8
(0.2) 		448.2
(3) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 45.1
(3)
P 		17.4
(-3)
A 		32.4
(0.2)
P 		25.5
(-1.2)
P 		28
B 48.3
(3)
P 		24.6
(-2.1)
M 		20.5
(-3)
P 		28.8
(-1.2)
P 		28
C 54.1
(3)
P 		33.8
(-3)
P 		51.1
(2.1)
P 		34.8
(-2.7)
P 		20
avr 49.2
(3) 		25.3
(-3) 		34.7
(-0.6) 		29.7
(-1.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 24.4
(-3)
P 		38
(-2.1)
P 		49.8
(-1.4)
P 		73.4
(0.2)
P 		89.6
(1.2)
P 		117.5
(3)
P 		93
B 39.4
(-2.9)
P 		43.8
(-2.7)
P 		36.8
(-3)
P 		44.9
(-2.6)
P 		122
(1.3)
P 		157
(3)
P 		120
C 38.6
(-3)
P 		38.9
(-3)
P 		48.1
(-2.5)
P 		50.1
(-2.4)
P 		91.9
(-0.1)
P 		147.6
(3)
P 		109
avr 34.1
(-3) 		40.2
(-2.7) 		44.9
(-2.4) 		56.1
(-1.8) 		101.2
(0.8) 		140.7
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178953_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10147
Sequence Type Exemplar sequence
Representative Public ID B0001.2 NCBI
Target Description B0001.2 /REP_DB=WormBase Gene ID /WP=CE05140 /TR=Q17411 /GB=CAA93451.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069907 NCBI Caenorhabditis elegans B0001.2 (B0001.2) mRNA, complete cds. 11/11 None
SNAP00000035713 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12146581:12150935:-1 11/11 None
GENEFINDER00000035720 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12138993:12150935:-1 10/11 None
B0001.2 ENSEMBL cdna:known chromosome:CEL140:IV:12146465:12150946:-1 gene:B0001.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12146586-12150941(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.2
Entrez Gene 178164 Entrez gene
SwissProt Q17411 EMBL-EBI
WormBase CE36776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93451 Hypothetical protein B0001.2 [Caenorhabditis elegans] ref|NP_502308.2| B0001.2 [Caenorhabditis elegans] 0.0
blast CAA93454 Hypothetical protein B0001.5 [Caenorhabditis elegans] ref|NP_502306.1| B0001.5 [Caenorhabditis elegans] 0.0
blast CAA93452 Hypothetical protein B0001.3 [Caenorhabditis elegans] ref|NP_502307.1| B0001.3 [Caenorhabditis elegans] 0.0
blast CAE62192 Hypothetical protein CBG06240 [Caenorhabditis briggsae] 1.0E-118
blast CAE62192 Hypothetical protein CBG06240 [Caenorhabditis briggsae] 1.0E-113
blast CAE61583 Hypothetical protein CBG05497 [Caenorhabditis briggsae] 6.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.0E-70
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.1E-64
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.0E-70
Sequence
Target Sequence 
>C. ELEGANS:178953_S_AT
aatctcgccacctctatgaagtgattctcgataaagatggaaaagtcgtcgaattgttcg
attgtccacagtactttacatctaattccaagggggaggtggaatttaaagtgatttgca
gcgatgaatgtcttcttacaaaaaatgttggtctcatggagccaattggtgcaccaaaat
ggatcggaaaactgatgttgtgcacagaagatcgtccaattccgaaaaagaagattctaa
tgaatgcgacgttcaaacttcttgaagatgatgatcttttcgttgacgaggatcttgttc
gtgaggaaagcgtgtgcttcgtcaatattggacgcggtgagaaaatggaaaatcaagaca
tcgacgaagtctttaaaatagagaagaatgactcggatcgacaagtgaacaacttgttcc
gcacaaaattgacgtgcatgccaagcgagaccatttattcgcagttcgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTCGCCACCTCTATGAAGTGAT 620 169 2276 Antisense
GTCGTCGAATTGTTCGATTGTCCAC 297 473 2320 Antisense
GATTGTCCACAGTACTTTACATCTA 561 435 2335 Antisense
GATTTGCAGCGATGAATGTCTTCTT 509 427 2388 Antisense
GTCTCATGGAGCCAATTGGTGCACC 69 471 2426 Antisense
GTGCACAGAAGATCGTCCAATTCCG 422 481 2475 Antisense
TGAATGCGACGTTCAAACTTCTTGA 669 575 2516 Antisense
AAGCGTGTGCTTCGTCAATATTGGA 88 151 2583 Antisense
GACTCGGATCGACAAGTGAACAACT 553 373 2665 Antisense
TTGACGTGCATGCCAAGCGAGACCA 87 705 2704 Antisense
GAGACCATTTATTCGCAGTTCGTTC 93 395 2722 Antisense
Sequence Source Affymetrix Proprietary Database