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[178952_at]

Description T05A1.4 /REP_DB=WormBase Gene ID /WP=CE03624 /TR=Q22184 /GB=CAA92477.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 10.6
(-3)
A 		19
(3)
A 		14.7
(-0.1)
A 		17.6
(2)
A 		8
B 6.9
(-2.1)
A 		12.8
(3)
A 		10.2
(0.7)
A 		5.9
(-3)
A 		7
C 14.6
(-2.4)
A 		87
(3)
A 		6.2
(-3)
A 		11.4
(-2.6)
A 		81
avr 10.7
(-2.9) 		39.6
(3) 		10.4
(-3) 		11.6
(-2.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 34.4
(3)
A 		8.1
(-2.8)
A 		7.3
(-3)
A 		13.3
(-1.7)
A 		8.6
(-2.7)
A 		7.9
(-2.9)
A 		27
B 9.8
(-0)
A 		11.1
(0.6)
A 		12.9
(1.5)
A 		15.9
(3)
A 		6.5
(-1.7)
A 		3.9
(-3)
A 		12
C 11.1
(-1.9)
A 		7.7
(-3)
A 		12.6
(-1.4)
A 		9.1
(-2.5)
A 		12.6
(-1.4)
A 		26.3
(3)
A 		19
avr 18.4
(3) 		9
(-3) 		10.9
(-1.8) 		12.8
(-0.6) 		9.2
(-2.9) 		12.7
(-0.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 3.9
(2.2)
A 		4.1
(3)
A 		3.8
(1.8)
A 		2.6
(-3)
A 		2
B 2.2
(-0.2)
A 		3.2
(3)
A 		2.4
(0.5)
A 		1.3
(-3)
A 		2
C 4.8
(-2.2)
A 		25
(3)
A 		2.2
(-2.9)
A 		1.9
(-3)
A 		23
avr 3.6
(-1.9) 		10.8
(3) 		2.8
(-2.4) 		1.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.3
(3)
A 		2.9
(-1.3)
A 		1.6
(-3)
A 		3.4
(-0.7)
A 		2.6
(-1.7)
A 		1.9
(-2.6)
A 		5
B 3.4
(1.3)
A 		3.7
(1.9)
A 		3.1
(0.6)
A 		4.2
(3)
A 		2.6
(-0.4)
A 		1.4
(-3)
A 		3
C 4.1
(-1)
A 		2.4
(-2.5)
A 		3.2
(-1.8)
A 		1.8
(-3)
A 		4.1
(-1)
A 		8.8
(3)
A 		7
avr 4.6
(3) 		3
(-1.8) 		2.6
(-3) 		3.1
(-1.5) 		3.1
(-1.5) 		4
(1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8941
Sequence Type Exemplar sequence
Representative Public ID T05A1.4 NCBI
Target Description T05A1.4 /REP_DB=WormBase Gene ID /WP=CE03624 /TR=Q22184 /GB=CAA92477.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069296 NCBI Caenorhabditis elegans T05A1.4 (T05A1.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000033947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9548450:9555983:-1 11/11 None
T05A1.4 ENSEMBL cdna:known chromosome:CEL140:IV:9548450:9555983:-1 gene:T05A1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl T05A1.4
Entrez Gene 188076 Entrez gene
SwissProt Q22184 EMBL-EBI
WormBase CE03624 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 0.0
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.0E-18
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 7.3E-76
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.0E-18
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 7.3E-76
Sequence
Target Sequence 
>C. ELEGANS:178952_AT
catgcgttcttcgattcaccgaactcatcctacgctccagagttttttccaaccgagaca
atgctagacattgcaaatccaaggattccaccttcccttctaaacgacaggttgattcac
cctcccgttggatcttctgttttggaacttgagggcatcgactacgacacgcccaatcca
gactttcaggacgatgaacttgagtacgtagatcccaacacgtctactcttgcttcagca
tcagatcacgccgcggccaaccttccaccaggtagaacccgagattacatccctcgaaag
gccaaggtgccctacattaattatgttcacagtctgtcagtcttagtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCGTTCTTCGATTCACCGAACT 39 211 6709 Antisense
ATCCTACGCTCCAGAGTTTTTTCCA 527 37 6735 Antisense
GCAAATCCAAGGATTCCACCTTCCC 21 317 6781 Antisense
TAAACGACAGGTTGATTCACCCTCC 147 639 6809 Antisense
CTCCCGTTGGATCTTCTGTTTTGGA 127 223 6830 Antisense
GGAACTTGAGGGCATCGACTACGAC 12 529 6852 Antisense
ACGCCCAATCCAGACTTTCAGGACG 123 91 6877 Antisense
ACGTAGATCCCAACACGTCTACTCT 499 93 6914 Antisense
CGTCTACTCTTGCTTCAGCATCAGA 214 247 6929 Antisense
GAAAGGCCAAGGTGCCCTACATTAA 145 361 7004 Antisense
GTTCACAGTCTGTCAGTCTTAGTCG 415 445 7033 Antisense
Sequence Source Affymetrix Proprietary Database