[Home] | [Total List]

[178951_at]

Description C27A7.6 /REP_DB=WormBase Gene ID /WP=CE08409 /TR=O01932 /GB=CAB02792.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 89      4grp_high_8_8 > 19      6grp_total > 99      4grp_total > 28      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 97
(0.3)
M 		92.7
(-0.3)
P 		72.6
(-3)
P 		116.8
(3)
P 		44
B 113.2
(2.3)
P 		118.7
(2.9)
P 		64.6
(-3)
A 		119.7
(3)
P 		55
C 110
(1.4)
P 		97
(-0.1)
A 		72.7
(-3)
P 		123.1
(3)
P 		50
avr 106.7
(1.4) 		102.8
(0.9) 		70
(-3) 		119.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 89.7
(-2.4)
P 		73.2
(-2.8)
P 		67
(-3)
A 		126.7
(-1.3)
P 		215.2
(1.2)
P 		278.8
(3)
P 		212
B 89.6
(-2.6)
P 		127.4
(-1.5)
P 		93.3
(-2.5)
P 		75.5
(-3)
P 		284.6
(3)
P 		280.6
(2.9)
P 		209
C 66.4
(-2.8)
A 		114.9
(-1.1)
P 		67.9
(-2.7)
P 		59.6
(-3)
P 		207.5
(2)
P 		237
(3)
P 		177
avr 81.9
(-2.8) 		105.2
(-2.1) 		76.1
(-3) 		87.3
(-2.6) 		235.8
(2.1) 		265.5
(3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 35.3
(3)
M 		20.1
(-2)
P 		19
(-2.4)
P 		17.1
(-3)
P 		18
B 36.1
(3)
P 		29.3
(1.1)
P 		15
(-3)
A 		25.5
(-0)
P 		21
C 36.4
(3)
P 		27.9
(-0.3)
A 		25.3
(-1.3)
P 		20.8
(-3)
P 		16
avr 35.9
(3) 		25.8
(-0.8) 		19.8
(-3) 		21.1
(-2.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 16.5
(-2.8)
P 		26
(-1.7)
P 		14.6
(-3)
A 		32.1
(-1)
P 		64.9
(2.7)
P 		67.9
(3)
P 		53
B 31.2
(-2.3)
P 		42.4
(-1.6)
P 		22.7
(-2.8)
P 		20
(-3)
P 		115.6
(3)
P 		104.6
(2.3)
P 		96
C 24.6
(-1.9)
A 		35.1
(-0.9)
P 		17.3
(-2.5)
P 		12
(-3)
P 		67.1
(1.9)
P 		79.3
(3)
P 		67
avr 24.1
(-2.5) 		34.5
(-1.5) 		18.2
(-3) 		21.4
(-2.7) 		82.5
(2.9) 		83.9
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14409
Sequence Type Exemplar sequence
Representative Public ID C27A7.6 NCBI
Target Description C27A7.6 /REP_DB=WormBase Gene ID /WP=CE08409 /TR=O01932 /GB=CAB02792.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073642 NCBI Caenorhabditis elegans C27A7.6 (C27A7.6) mRNA, complete cds. 11/11 A 
C27A7.6 ENSEMBL cdna:known chromosome:CEL140:V:12127740:12129898:-1 gene:C27A7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16768337-16769694(+) 61.2 61.2
chrIV:16766619-16768285(-) 75.55 75.55
chrV:12127739-12129898(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27A7.6
Entrez Gene 182951 Entrez gene
SwissProt O01932 EMBL-EBI
WormBase CE08409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 0.0
blast CAE75399 Hypothetical protein CBG23388 [Caenorhabditis briggsae] 0.0
blast CAB60344 Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506043.1 12 34-56,76-98,110-132,142-164,177-199,209-231,263-285,300-319,332-351,361-383,396-418,433-452
C27A7.6 12 34-56,76-98,110-132,142-164,177-199,209-231,263-285,300-319,332-351,361-383,396-418,433-452
Sequence
Target Sequence 
>C. ELEGANS:178951_AT
cactctttgtggatgtctcggtgccttttcaatacctcaattcccgattggagtggaact
tggtgttgagacgacattcccagtaatggaagcaacgtcatcaggtgttcttgttatatt
cggatcgcttttcatgttcattattccatttgcacaaaattacacagaaaagttgcactt
gttctatgcacaatcttggaaatttgctctcgatgtaacatgtgggctctcaattgtatc
tgtcatcttatcactgttctttttgagaccacgatatcgtcgtctagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCTTTGTGGATGTCTCGGTGCC 660 195 1107 Antisense
GGTGCCTTTTCAATACCTCAATTCC 280 501 1126 Antisense
ATACCTCAATTCCCGATTGGAGTGG 371 21 1138 Antisense
GGTGTTGAGACGACATTCCCAGTAA 155 501 1168 Antisense
GAAGCAACGTCATCAGGTGTTCTTG 229 341 1195 Antisense
TGTTCTTGTTATATTCGGATCGCTT 466 561 1212 Antisense
TCGGATCGCTTTTCATGTTCATTAT 357 607 1226 Antisense
GGAAATTTGCTCTCGATGTAACATG 322 527 1304 Antisense
TGTGGGCTCTCAATTGTATCTGTCA 433 555 1327 Antisense
GTATCTGTCATCTTATCACTGTTCT 68 455 1342 Antisense
GAGACCACGATATCGTCGTCTAGAA 227 393 1371 Antisense
Sequence Source Affymetrix Proprietary Database