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[178950_at]

Description T03E6.6 /REP_DB=WormBase Gene ID /WP=CE16332 /TR=O45739 /GB=CAB07280.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 9.3
(-3)
A 		36.9
(2.7)
A 		38.5
(3)
A 		38.1
(2.9)
A 		29
B 32.8
(1.5)
A 		11.6
(-1.8)
A 		4.2
(-3)
A 		42.1
(3)
A 		38
C 6.6
(-3)
A 		20.2
(-0.8)
A 		6.4
(-3)
A 		43.7
(3)
A 		37
avr 16.2
(-3) 		22.9
(-1.4) 		16.4
(-3) 		41.3
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 9.5
(-2)
A 		2.7
(-3)
A 		11.1
(-1.8)
A 		20.9
(-0.4)
A 		31.4
(1.1)
A 		44.4
(3)
A 		42
B 23.9
(-0.4)
A 		16.9
(-1.6)
A 		22.2
(-0.7)
A 		31.4
(0.9)
A 		9.1
(-3)
A 		43.1
(3)
A 		34
C 7.7
(-3)
A 		39.5
(3)
A 		10
(-2.6)
A 		13.2
(-2)
A 		9
(-2.8)
A 		9.2
(-2.7)
A 		32
avr 13.7
(-3) 		19.7
(-1.1) 		14.4
(-2.8) 		21.8
(-0.4) 		16.5
(-2.1) 		32.2
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.4
(-3)
A 		8
(1.1)
A 		10.1
(3)
A 		5.6
(-1)
A 		7
B 10.5
(3)
A 		2.9
(-1.8)
A 		1
(-3)
A 		9
(2.1)
A 		10
C 2.2
(-3)
A 		5.8
(1.2)
A 		2.2
(-3)
A 		7.4
(3)
A 		5
avr 5.4
(-0.9) 		5.6
(-0.5) 		4.4
(-3) 		7.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-2.5)
A 		1
(-3)
A 		2.4
(-2.1)
A 		5.3
(-0.4)
A 		9.5
(2.2)
A 		10.8
(3)
A 		10
B 8.3
(-0.8)
A 		5.6
(-2.1)
A 		5.4
(-2.2)
A 		8.3
(-0.8)
A 		3.7
(-3)
A 		16.1
(3)
A 		12
C 2.9
(-2.8)
A 		12.1
(3)
A 		2.6
(-3)
A 		2.7
(-2.9)
A 		2.9
(-2.8)
A 		3.1
(-2.7)
A 		10
avr 4.3
(-2.3) 		6.2
(-0.5) 		3.5
(-3) 		5.4
(-1.2) 		5.4
(-1.2) 		10
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13464
Sequence Type Exemplar sequence
Representative Public ID T03E6.6 NCBI
Target Description T03E6.6 /REP_DB=WormBase Gene ID /WP=CE16332 /TR=O45739 /GB=CAB07280.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074796 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-73) (srw-73) mRNA, complete cds. 11/11 None
GENEFINDER00000008709 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16589324:16591110:-1 11/11 None
T03E6.6 ENSEMBL cdna:known chromosome:CEL140:V:16589622:16591110:-1 gene:T03E6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16589621-16591110(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srw-73
Ensembl T03E6.6
Entrez Gene 188019 Entrez gene
SwissProt O45739 EMBL-EBI
WormBase CE16332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07280 Hypothetical protein T03E6.6 [Caenorhabditis elegans] ref|NP_507197.1| Serpentine Receptor, class W family member (srw-73) [Caenorhabditis elegans] 0.0
blast CAB03506 Hypothetical protein ZK1037.7 [Caenorhabditis elegans] ref|NP_506800.1| Serpentine Receptor, class W family member (srw-70) [Caenorhabditis elegans] 3.0E-85
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 2.0E-38
blast CAE70404 Hypothetical protein CBG16974 [Caenorhabditis briggsae] 1.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507197.1 7 50-72,85-107,136-158,171-193,246-268,289-311,331-353
T03E6.6 7 50-72,85-107,136-158,171-193,246-268,289-311,331-353
GENEFINDER00000008709 7 50-72,85-107,136-158,171-193,246-268,289-311,331-353
Sequence
Target Sequence 
>C. ELEGANS:178950_AT
tatcatggttttccttagcgcggtaattagtgtttggtataatgcgaggtattcaatatt
gaagaatggtttgtgggttcctaggaagagatgcaattatccgcctggttatactgaatt
gcagtatgcaattcgagttgggcgaaagattatattcacagaaatgatgtctcaaacaat
atttgcatatttgaatggctccttgaatataatcccagctgtcttgtacccagtcgttgc
cattgtcttagtaatacgacttttaaaaatgagaaaggatagaaaaaatgtgataagtcg
acggcagaatgttaaaagagagcacacgacaactctagtcatcctattatcaattacatt
cttcatatctcaattgccttctggaatattcctatggcttggaaatctctacaagttcaa
cactgtcgtgagaagtattgtgttcgaaggaaaaaatgtcacctcaattttgtttacggt
taatgccacgtcacactgtatcatttttgcggtactgagctcccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCATGGTTTTCCTTAGCGCGGTA 455 657 546 Antisense
GAAGAGATGCAATTATCCGCCTGGT 312 339 630 Antisense
ATCCGCCTGGTTATACTGAATTGCA 182 39 644 Antisense
AATATAATCCCAGCTGTCTTGTACC 97 171 751 Antisense
CCAGTCGTTGCCATTGTCTTAGTAA 663 271 775 Antisense
CAACTCTAGTCATCCTATTATCAAT 161 189 875 Antisense
TCTTCATATCTCAATTGCCTTCTGG 193 617 905 Antisense
ATCTCTACAAGTTCAACACTGTCGT 34 33 950 Antisense
ATGTCACCTCAATTTTGTTTACGGT 180 49 1001 Antisense
ATGCCACGTCACACTGTATCATTTT 426 41 1028 Antisense
ATTTTTGCGGTACTGAGCTCCCAAT 80 15 1048 Antisense
Sequence Source Affymetrix Proprietary Database