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[178948_at]

Description C05A9.2 /REP_DB=WormBase Gene ID /WP=CE05222 /TR=Q17644 /GB=CAA94201.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 22      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 385.5
(1.1)
P 		274.6
(-1)
P 		169.4
(-3)
P 		485.6
(3)
P 		316
B 442.7
(3)
P 		283.8
(-1.1)
P 		209.7
(-3)
P 		423.5
(2.5)
P 		233
C 438.7
(3)
P 		268.5
(-0.8)
P 		170.8
(-3)
P 		391.8
(1.9)
P 		268
avr 422.3
(2.7) 		275.6
(-0.8) 		183.3
(-3) 		433.6
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 296.5
(3)
P 		172.8
(-1)
P 		180.9
(-0.7)
P 		111.5
(-3)
P 		141.7
(-2)
P 		138.8
(-2.1)
P 		185
B 312.2
(3)
P 		175.3
(-1)
P 		204.6
(-0.1)
P 		151
(-1.7)
P 		104.4
(-3)
P 		178.5
(-0.9)
P 		208
C 230
(3)
P 		179.1
(0.1)
P 		194.5
(1)
P 		172.5
(-0.3)
P 		125.9
(-3)
P 		197.2
(1.1)
P 		104
avr 279.6
(3) 		175.7
(-1) 		193.3
(-0.3) 		145
(-2.2) 		124
(-3) 		171.5
(-1.2) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 140.4
(3)
P 		59.6
(-2)
P 		44.3
(-3)
P 		71.1
(-1.3)
P 		96
B 141.2
(3)
P 		70.1
(-1.6)
P 		48.6
(-3)
P 		90.2
(-0.3)
P 		93
C 145.2
(3)
P 		77.2
(-1.8)
P 		59.5
(-3)
P 		66.1
(-2.5)
P 		86
avr 142.3
(3) 		69
(-1.8) 		50.8
(-3) 		75.8
(-1.4) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 54.7
(1.8)
P 		61.5
(3)
P 		39.4
(-1)
P 		28.3
(-3)
P 		42.8
(-0.4)
P 		33.8
(-2)
P 		33
B 108.6
(3)
P 		58.4
(-1.4)
P 		49.7
(-2.2)
P 		40
(-3)
P 		42.4
(-2.8)
P 		66.5
(-0.7)
P 		69
C 85.3
(3)
P 		54.7
(-0.6)
P 		49.5
(-1.2)
P 		34.7
(-3)
P 		40.7
(-2.3)
P 		66
(0.7)
P 		51
avr 82.9
(3) 		58.2
(-0) 		46.2
(-1.5) 		34.3
(-3) 		42
(-2) 		55.4
(-0.4) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16182
Sequence Type Exemplar sequence
Representative Public ID C05A9.2 NCBI
Target Description C05A9.2 /REP_DB=WormBase Gene ID /WP=CE05222 /TR=Q17644 /GB=CAA94201.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077408 NCBI Caenorhabditis elegans C05A9.2 (C05A9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000001260 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10842892:10844596:-1 11/11 None
C05A9.2 ENSEMBL cdna:known chromosome:CEL140:X:10842892:10844692:-1 gene:C05A9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001256 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10842891-10844692(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05A9.2
Entrez Gene 182243 Entrez gene
SwissProt Q17644 EMBL-EBI
WormBase CE05222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94201 Hypothetical protein C05A9.2 [Caenorhabditis elegans] ref|NP_509809.1| C05A9.2 [Caenorhabditis elegans] 5.0E-77
blast CAA94201 Hypothetical protein C05A9.2 [Caenorhabditis elegans] ref|NP_509809.1| C05A9.2 [Caenorhabditis elegans] 5.0E-57
blast CAE70812 Hypothetical protein CBG17577 [Caenorhabditis briggsae] 5.0E-26
blast CAE70812 Hypothetical protein CBG17577 [Caenorhabditis briggsae] 7.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509809.1 1 153-175
C05A9.2 1 153-175
GENEFINDER00000001260 1 121-143
Sequence
Target Sequence 
>C. ELEGANS:178948_AT
aggaaagcgtgttttcttctcctagtttcggttttcgcggtgtccgcgcaatcgatcgat
gaagaagaacgtgtgcatgtcggagaaggaagtggtaatggaatcacagacgatgaagat
agtgacatggaggggtcatcgcttccaccagatacttattatgccacgacaccacaaatt
cgacaaaagtttgttccaagtacaaaaatggaaacgaccacaacgaagattgtcacattc
acaacatcggatagaattgtgacatcgccgcgaaatgtgatcgaagttactacatcatct
gattctcgaccatcagttccctcaggatcatcaatgttttttggaactcagggaatcttc
attattcttggagcaatcatggctttgctcattattttgattttgcttgtgttatgcttt
aaagcaagaaataacaaaaaacaagcttatcggccagggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAAGCGTGTTTTCTTCTCCTAG 230 55 118 Antisense
TTTCGGTTTTCGCGGTGTCCGCGCA 556 669 143 Antisense
GTGTCCGCGCAATCGATCGATGAAG 436 487 157 Antisense
GTGACATGGAGGGGTCATCGCTTCC 356 477 239 Antisense
CATCGCTTCCACCAGATACTTATTA 20 213 254 Antisense
TACTTATTATGCCACGACACCACAA 12 645 270 Antisense
GATAGAATTGTGACATCGCCGCGAA 303 423 367 Antisense
ATCTGATTCTCGACCATCAGTTCCC 575 33 414 Antisense
CCATCAGTTCCCTCAGGATCATCAA 406 269 427 Antisense
CAATCATGGCTTTGCTCATTATTTT 490 181 491 Antisense
AAAACAAGCTTATCGGCCAGGGCAA 467 107 555 Antisense
Sequence Source Affymetrix Proprietary Database