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[178947_at] G-protein coupled receptor, srh family

Description T19C9.4 /REP_DB=WormBase Gene ID /WP=CE16421 /TR=O45795 /GB=CAB07489.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 26      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 5.9
(-3)
A 		11.4
(3)
A 		6.5
(-2.3)
A 		5.9
(-3)
A 		6
B 2
(-3)
A 		19.6
(3)
A 		19.5
(3)
A 		10
(-0.3)
A 		18
C 5.4
(-2.8)
A 		33.6
(0.3)
A 		3.3
(-3)
A 		58.2
(3)
A 		55
avr 4.4
(-3) 		21.5
(2.1) 		9.8
(-1.4) 		24.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 23.6
(1.6)
A 		10.7
(-1.3)
A 		22.8
(1.4)
A 		29.8
(3)
A 		3.3
(-3)
A 		5.3
(-2.5)
A 		27
B 5.4
(-3)
A 		5.7
(-2.9)
A 		33.7
(3)
A 		11.5
(-1.7)
A 		15.4
(-0.9)
A 		9.9
(-2)
A 		28
C 2.3
(-3)
A 		28.9
(1.6)
A 		12.8
(-1.2)
A 		36.9
(3)
A 		2.6
(-2.9)
A 		37.1
(3)
A 		35
avr 10.4
(-2) 		15.1
(-0.5) 		23.1
(2.1) 		26.1
(3) 		7.1
(-3) 		17.4
(0.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(1.5)
A 		2.5
(3)
A 		1.7
(-0)
A 		0.9
(-3)
A 		2
B 0.6
(-3)
A 		4.8
(3)
A 		4.5
(2.6)
A 		2.1
(-0.9)
A 		4
C 1.8
(-2.5)
A 		9.7
(2.9)
A 		1.1
(-3)
A 		9.8
(3)
A 		9
avr 1.5
(-3) 		5.7
(3) 		2.4
(-1.7) 		4.3
(1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.4
(0.1)
A 		3.8
(-0.5)
A 		5
(0.6)
A 		7.6
(3)
A 		1
(-3)
A 		1.3
(-2.7)
A 		7
B 1.9
(-3)
A 		1.9
(-3)
A 		8.2
(3)
A 		3
(-2)
A 		6.3
(1.2)
A 		3.7
(-1.3)
A 		6
C 0.9
(-2.9)
A 		8.8
(1.1)
A 		3.3
(-1.7)
A 		7.4
(0.4)
A 		0.8
(-3)
A 		12.4
(3)
A 		12
avr 2.4
(-3) 		4.8
(1) 		5.5
(2.2) 		6
(3) 		2.7
(-2.5) 		5.8
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12997
Sequence Type Exemplar sequence
Representative Public ID T19C9.4 NCBI
Target Description T19C9.4 /REP_DB=WormBase Gene ID /WP=CE16421 /TR=O45795 /GB=CAB07489.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074960 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-109) (srh-109) mRNA, complete cds. 11/11 A 
SNAP00000010310 ENSEMBL cdna:SNAP chromosome:CEL140:V:17221830:17223022:-1 11/11 None
T19C9.4 ENSEMBL cdna:known chromosome:CEL140:V:17221830:17223022:-1 gene:T19C9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17221829-17223022(-) 98.86 100.0
chrV:17480908-17481954(-) 90.37 91.51
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-109
Ensembl T19C9.4
Entrez Gene 188599 Entrez gene
SwissProt O45795 EMBL-EBI
WormBase CE33187 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07489 Hypothetical protein T19C9.4 [Caenorhabditis elegans] ref|NP_507361.2| Serpentine Receptor, class H family member (srh-109) [Caenorhabditis elegans] 0.0
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 1.0E-136
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507361.2 7 31-53,66-88,108-130,150-172,194-216,223-242,257-279
T19C9.4 7 31-53,66-88,108-130,150-172,194-216,223-242,257-279
SNAP00000010310 7 31-53,66-88,108-130,150-172,194-216,223-242,257-279
Sequence
Target Sequence 
>C. ELEGANS:178947_AT
gtagctctctactcgaaaaccgattcagaatacatcgaaaatcatctagtttcttatatt
acacctatttttttgctccttacatagcggtactagttgccatatataacgttgctgaag
aatcggatgctgcaaagttgcgggctctggaagtttatccttgccctacacccgagtttt
ttatgttctcagtttgtgtattcgtcggaaacccaagtaacatgtttctaatttttgctt
tcttgttgttgcaagctactggaaacattatatttcacgtcgcatgtcttgtatattact
tatatgttgcgccaccaagcacactgtctcaagctacaaagcgtgatcaaagaacatttt
tgatatctgtatcaatacagacatcaattccactttttgttataatcgcacctgctatgg
cggttttgttagcatcgtggacgggaacttatcgtcaagaatggatgaatttgtctaacg
tttgtattgcaactcatgggcttgctgaaagcatttcaatcatgttggtacacaagccct
atcgagcagccattagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCTCTCTACTCGAAAACCGATT 675 455 365 Antisense
ACGTTGCTGAAGAATCGGATGCTGC 161 93 473 Antisense
TACACCCGAGTTTTTTATGTTCTCA 487 641 531 Antisense
GTTCTCAGTTTGTGTATTCGTCGGA 249 443 549 Antisense
GTTTCTAATTTTTGCTTTCTTGTTG 144 451 588 Antisense
ATTTCACGTCGCATGTCTTGTATAT 225 15 636 Antisense
ACTTATATGTTGCGCCACCAAGCAC 108 101 662 Antisense
CACCAAGCACACTGTCTCAAGCTAC 88 203 677 Antisense
TATAATCGCACCTGCTATGGCGGTT 451 637 765 Antisense
ATCATGTTGGTACACAAGCCCTATC 669 29 883 Antisense
CAAGCCCTATCGAGCAGCCATTAGG 397 183 897 Antisense
Sequence Source Affymetrix Proprietary Database