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[178943_at]

Description C09H6.3 /REP_DB=WormBase Gene ID /WP=CE15611 /TR=O17581 /GB=CAB03867.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 55      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 262.9
(3)
P 		209.8
(-2.1)
P 		207.2
(-2.4)
P 		200.6
(-3)
P 		62
B 241.9
(0.3)
P 		169.9
(-3)
P 		300
(3)
P 		293.1
(2.7)
P 		130
C 283.8
(3)
P 		211.5
(-1.3)
P 		183
(-3)
P 		183.2
(-3)
P 		101
avr 262.9
(3) 		197.1
(-3) 		230.1
(0) 		225.6
(-0.4) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 175
(-3)
P 		277.6
(-0.8)
P 		320.1
(0)
P 		319.9
(0)
P 		305
(-0.3)
P 		460.5
(3)
P 		286
B 204.9
(-3)
P 		254.7
(-2.1)
P 		374.5
(0)
P 		315
(-1)
P 		474.8
(1.8)
P 		541.1
(3)
P 		336
C 184.1
(-3)
P 		278.8
(-1.4)
P 		272.8
(-1.5)
P 		449.7
(1.6)
P 		352.8
(-0.1)
P 		530.5
(3)
P 		346
avr 188
(-3) 		270.4
(-1.5) 		322.5
(-0.5) 		361.5
(0.2) 		377.5
(0.5) 		510.7
(3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 95.7
(3)
P 		45.5
(-1.5)
P 		54.2
(-0.8)
P 		29.4
(-3)
P 		66
B 77.1
(3)
P 		42
(-3)
P 		69.5
(1.7)
P 		62.5
(0.5)
P 		35
C 93.9
(3)
P 		60.8
(-0.2)
P 		63.8
(0.1)
P 		30.9
(-3)
P 		63
avr 88.9
(3) 		49.4
(-1.9) 		62.5
(-0.3) 		40.9
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 32.3
(-3)
P 		98.7
(2)
P 		69.7
(-0.2)
P 		81.1
(0.7)
P 		92
(1.5)
P 		112.1
(3)
P 		80
B 71.3
(-3)
P 		84.8
(-2.4)
P 		90.9
(-2.1)
P 		83.4
(-2.4)
P 		192.9
(2.6)
P 		201.8
(3)
P 		131
C 68.2
(-3)
P 		85.1
(-2.1)
P 		69.4
(-2.9)
P 		90.4
(-1.8)
P 		114.2
(-0.5)
P 		177.6
(3)
P 		109
avr 57.3
(-3) 		89.5
(-1.2) 		76.7
(-1.9) 		85
(-1.4) 		133
(1.3) 		163.8
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.580
Sequence Type Exemplar sequence
Representative Public ID C09H6.3 NCBI
Target Description C09H6.3 /REP_DB=WormBase Gene ID /WP=CE15611 /TR=O17581 /GB=CAB03867.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059827 NCBI Caenorhabditis elegans MAternally affected Uncoordination family member (mau-2) (mau-2) mRNA, complete cds. 11/11 None
SNAP00000018786 ENSEMBL cdna:SNAP chromosome:CEL140:I:8133933:8137983:1 10/11 None
GENEFINDER00000018790 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8133933:8137983:1 11/11 None
C09H6.3 ENSEMBL cdna:known chromosome:CEL140:I:8133927:8138209:1 gene:C09H6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8133863-8137914(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mau-2
Ensembl C09H6.3
Entrez Gene 172598 Entrez gene
SwissProt O17581 EMBL-EBI
WormBase CE15611 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248453_AT expressed protein at
CANINE_2:CFAAFFX.22078.1.S1_AT similar to CG4203-PA cfa
CANINE_2:CFAAFFX.22078.1.S1_S_AT similar to CG4203-PA cfa
DROSOPHILA_2:1629165_AT dm
DROSGENOME1:154467_AT dm
CHICKEN:GGAAFFX.21328.1.S1_S_AT similar to RIKEN cDNA 9130404D08 gga
HG-U133_PLUS_2:216926_S_AT KIAA0892 hs
HG-U133A_2:216926_S_AT KIAA0892 hs
HG-U133A:216926_S_AT KIAA0892 hs
HG-U133_PLUS_2:216927_AT KIAA0892 hs
HG-U133A_2:216927_AT KIAA0892 hs
HG-U133A:216927_AT KIAA0892 hs
HG-U133_PLUS_2:217652_AT KIAA0892 hs
HG-U133A_2:217652_AT KIAA0892 hs
HG-U133A:217652_AT KIAA0892 hs
HU35KSUBB:RC_H98961_AT KIAA0892 hs
HU35KSUBB:RC_AA176475_AT KIAA0892 hs
U133_X3P:HS.270982.0.A1_3P_AT KIAA0892 hs
U133_X3P:HS.112751.3.A1_3P_A_AT KIAA0892 hs
U133_X3P:HS.112751.1.A1_3P_A_AT KIAA0892 hs
U133_X3P:HS.112751.0.A1_3P_AT KIAA0892 hs
HG-U133A_2:212505_S_AT KIAA0892 hs
HG-U133_PLUS_2:212505_S_AT KIAA0892 hs
HG-U133A:212505_S_AT KIAA0892 hs
HG-U133_PLUS_2:227465_AT KIAA0892 hs
HG-U133B:227465_AT KIAA0892 hs
HG-U95AV2:36054_AT KIAA0892 hs
HG-U95AV2:36055_AT KIAA0892 hs
HG-U95AV2:36056_G_AT KIAA0892 hs
HG-U95B:49224_AT KIAA0892 hs
HG-U133_PLUS_2:240839_AT KIAA0892 hs
HG-U133B:240839_AT KIAA0892 hs
HG-U95E:72630_AT KIAA0892 hs
HG-U95D:87796_AT KIAA0892 hs
U133_X3P:HS.227884.0.A1_3P_AT KIAA0892 hs
MOUSE430_2:1426250_S_AT RIKEN cDNA 9130404D08 gene mm
MOE430A:1426250_S_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430A_2:1426250_S_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430A_2:1451993_AT RIKEN cDNA 9130404D08 gene mm
MOE430A:1451993_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430_2:1451993_AT RIKEN cDNA 9130404D08 gene mm
MU11KSUBA:AA143935_AT RIKEN cDNA 9130404D08 gene mm
MG-U74AV2:104035_AT RIKEN cDNA 9130404D08 gene mm
MG-U74BV2:163955_AT RIKEN cDNA 9130404D08 gene mm
MOE430A:1431070_A_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430A_2:1431070_A_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430_2:1431070_A_AT RIKEN cDNA 9130404D08 gene mm
MOE430A:1456492_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430A_2:1456492_AT RIKEN cDNA 9130404D08 gene mm
MOUSE430_2:1456492_AT RIKEN cDNA 9130404D08 gene mm
MU19KSUBA:TC23144_AT RIKEN cDNA 9130404D08 gene (9130404D08Rik), mRNA mm
MU19KSUBA:TC24676_AT RIKEN cDNA 9130404D08 gene (9130404D08Rik), mRNA mm
RG-U34B:RC_AI045736_AT similar to KIAA0892 protein (predicted) rn
RAE230A:1377205_AT similar to KIAA0892 protein (predicted) rn
RAT230_2:1377205_AT similar to KIAA0892 protein (predicted) rn
RAE230B:1394439_AT similar to KIAA0892 protein (predicted) rn
RAT230_2:1394439_AT similar to KIAA0892 protein (predicted) rn
RAT230_2:1397290_AT Similar to KIAA0892 protein (predicted) rn
RAE230B:1397290_AT Similar to KIAA0892 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03867 Hypothetical protein C09H6.3 [Caenorhabditis elegans] ref|NP_492228.1| MAternally affected Uncoordination family member (mau-2) [Caenorhabditis elegans] 0.0
blast CAE66537 Hypothetical protein CBG11841 [Caenorhabditis briggsae] 0.0
blast CAE66537 Hypothetical protein CBG11841 [Caenorhabditis briggsae] 1.0E-179
blast CAE66537 Hypothetical protein CBG11841 [Caenorhabditis briggsae] 1.0E-175
blast EAA01134 ENSANGP00000009739 [Anopheles gambiae str. PEST] ref|XP_321782.2| ENSANGP00000009739 [Anopheles gambiae str. PEST] 1.0E-28
Sequence
Target Sequence 
>C. ELEGANS:178943_AT
gaaaaccacttccgtgcggcaatgaagaaactccacaaagaagatattaccgctcataat
acaatggctcttctcaatttgaatctggcaataacttatctcaatcaactgaaaatggcc
gattattacgaagtttcagaaaacttaactgctccgaaaatttcgtcttgctcccaaatg
ctcaagaataatgtgaagcttctatcagcattcttcgcttatattacaaataaattgaat
gaatgtaaacttctgagtcacgaggttcttgatgattcaaaagcagaagatttctttcgt
ttacatggtcttggtcttcttcttttatcacttgttactgatgttgatgaaaaaggagtt
cgaccaactgttgattggagcaagaaatcacatgatcatgttgttatattattcagtcat
tcactctacgaaaaaatcttattagcagccggatatgaccctaaatcggaactaatgaaa
atggtggtcagtgaacaattggcttcaagacggatgttaagtgttgaaaatttgactcct
ttggtagcgaacatgccagcttctaaattgcttcagtggttcgacggagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACCACTTCCGTGCGGCAATGA 645 353 1165 Antisense
TCCGAAAATTTCGTCTTGCTCCCAA 554 595 1317 Antisense
AGCTTCTATCAGCATTCTTCGCTTA 453 79 1361 Antisense
AAACTTCTGAGTCACGAGGTTCTTG 439 125 1411 Antisense
CGTTTACATGGTCTTGGTCTTCTTC 579 245 1462 Antisense
CTTCTTCTTTTATCACTTGTTACTG 332 221 1480 Antisense
ATTATTCAGTCATTCACTCTACGAA 210 13 1572 Antisense
CAGCCGGATATGACCCTAAATCGGA 682 201 1610 Antisense
GAAAATTTGACTCCTTTGGTAGCGA 436 353 1690 Antisense
GGTAGCGAACATGCCAGCTTCTAAA 344 499 1707 Antisense
ATTGCTTCAGTGGTTCGACGGAGAT 529 5 1731 Antisense
Sequence Source Affymetrix Proprietary Database