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[178942_s_at]

Description T22A3.3 /REP_DB=WormBase Gene ID /WP=CE13916 /TR=P91820 /GB=CAB03381.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 153.1
(-3)
P 		220.9
(-1.5)
P 		258.4
(-0.7)
P 		426.7
(3)
P 		274
B 151.2
(-3)
P 		196.9
(-1.9)
P 		254.7
(-0.4)
P 		392.4
(3)
P 		241
C 159.6
(-3)
P 		216.6
(-2)
P 		247.8
(-1.5)
P 		505.9
(3)
P 		346
avr 154.6
(-3) 		211.5
(-1.8) 		253.6
(-0.9) 		441.7
(3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 634
1 2 3 4 5 6 range
A 118.6
(-3)
P 		198.9
(-2.2)
P 		221.6
(-2)
P 		261.4
(-1.6)
P 		371.8
(-0.6)
P 		752.1
(3)
P 		634
B 179.1
(-3)
P 		191.2
(-2.8)
P 		220.3
(-2.4)
P 		228.5
(-2.3)
P 		399.4
(0.1)
P 		604.7
(3)
P 		426
C 200.1
(-2.9)
P 		190
(-3)
P 		240.8
(-2.4)
P 		304
(-1.6)
P 		369.2
(-0.8)
P 		669
(3)
P 		479
avr 165.9
(-3) 		193.4
(-2.7) 		227.6
(-2.3) 		264.6
(-1.8) 		380.1
(-0.5) 		675.3
(3) 		509
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 55.7
(-0.6)
P 		48
(-3)
P 		67.5
(3)
P 		62.5
(1.5)
P 		20
B 48.2
(-3)
P 		48.6
(-2.9)
P 		59
(-1.2)
P 		83.6
(3)
P 		35
C 52.8
(-3)
P 		62.3
(-1.3)
P 		86.4
(3)
P 		85.3
(2.8)
P 		34
avr 52.2
(-3) 		53
(-2.8) 		71
(1.5) 		77.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 21.9
(-3)
P 		70.8
(-1.2)
P 		48.3
(-2)
P 		66.3
(-1.3)
P 		112.2
(0.4)
P 		183.1
(3)
P 		161
B 62.3
(-2.7)
P 		63.6
(-2.6)
P 		53.5
(-3)
P 		60.5
(-2.8)
P 		162.3
(0.8)
P 		225.5
(3)
P 		172
C 74.2
(-2.4)
P 		58
(-3)
P 		61.3
(-2.9)
P 		61.1
(-2.9)
P 		119.5
(-0.8)
P 		224
(3)
P 		166
avr 52.8
(-3) 		64.1
(-2.6) 		54.4
(-2.9) 		62.6
(-2.6) 		131.3
(-0) 		210.9
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1782
Sequence Type Exemplar sequence
Representative Public ID T22A3.3 NCBI
Target Description T22A3.3 /REP_DB=WormBase Gene ID /WP=CE13916 /TR=P91820 /GB=CAB03381.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026457(11), NM_001026458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026457 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-1) (lst-1) mRNA, complete cds. 11/11 None
NM_001026458 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-1) (lst-1) mRNA, complete cds. 11/11 None
GENEFINDER00000000346 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10596413:10598201:1 11/11 None
SNAP00000000335 ENSEMBL cdna:SNAP chromosome:CEL140:I:10596633:10598201:1 11/11 None
T22A3.3 ENSEMBL cdna:known chromosome:CEL140:I:10596272:10598568:1 gene:T22A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10596202-10598132(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22A3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03381 Hypothetical protein T22A3.3a [Caenorhabditis elegans] ref|NP_001021628.1| Lateral Signaling Target family member (lst-1) [Caenorhabditis elegans] 0.0
blast CAB03381 Hypothetical protein T22A3.3a [Caenorhabditis elegans] ref|NP_001021628.1| Lateral Signaling Target family member (lst-1) [Caenorhabditis elegans] 1.0E-164
blast CAB03381 Hypothetical protein T22A3.3a [Caenorhabditis elegans] ref|NP_001021628.1| Lateral Signaling Target family member (lst-1) [Caenorhabditis elegans] 1.0E-158
blast AAO27839 unknown protein [Caenorhabditis elegans] 1.0E-157
blast CAI79225 Hypothetical protein T22A3.3b [Caenorhabditis elegans] ref|NP_001021629.1| Lateral Signaling Target family member (lst-1) [Caenorhabditis elegans] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:178942_S_AT
agaacaccatcttccggattttcgtcggcttcttcgtcggagaacatgttttctggattg
acattgtcagacaatgagaacaaaatccacgaaatcatggatccatcagttgacgtggat
cttgacatgtttcttttgcctgattgtcgatacaagcaaccagtgcaaccatcaaccagc
acatcccgtaacaatgtgagccagatcagcgggtcgagtcgtctaaatggatccacgaga
catgtcgcaccaattgttccaaaagttgcaatgccgtcggagttatcatatgccaacgtg
aagcgttcaagtggatatgtggattatatgccaacaacttacaattccaacgtgacgtcc
aattcgtctgcagcatcggttccaatgtctccgggcacatgggttcggtgtcactattgc
tgggagtcgtatgtgaaactgtgccaacgagttgcaaatctcgaaccactcatctcatgt
gatggcccatggaattggcatacactttatgatatgcaaggacgagtcacatgtccccga
ctgtggtttgctcaactcgatcgtgccggttcagaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACACCATCTTCCGGATTTTCGT 210 71 652 Antisense
GGATCTTGACATGTTTCTTTTGCCT 703 511 768 Antisense
TGAGCCAGATCAGCGGGTCGAGTCG 448 567 848 Antisense
GGTCGAGTCGTCTAAATGGATCCAC 13 503 863 Antisense
GAGACATGTCGCACCAATTGTTCCA 513 393 888 Antisense
ACGTGACGTCCAATTCGTCTGCAGC 123 95 1001 Antisense
TGCAGCATCGGTTCCAATGTCTCCG 197 579 1020 Antisense
GCACATGGGTTCGGTGTCACTATTG 552 315 1046 Antisense
ATCTCGAACCACTCATCTCATGTGA 80 33 1109 Antisense
ACTGTGGTTTGCTCAACTCGATCGT 546 95 1191 Antisense
ACTCGATCGTGCCGGTTCAGAAATG 108 99 1206 Antisense
Sequence Source Affymetrix Proprietary Database