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[178941_at]

Description F09A5.3 /REP_DB=WormBase Gene ID /WP=CE03175 /TR=Q19236 /GB=CAA93645.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 118
(-0.6)
A 		41.6
(-3)
A 		55.8
(-2.6)
A 		236.6
(3)
P 		195
B 140.7
(0)
P 		65.6
(-2.5)
A 		51.2
(-3)
A 		230.1
(3)
P 		179
C 194.4
(0.5)
A 		98.9
(-2.4)
A 		79.7
(-3)
A 		275.6
(3)
P 		196
avr 151
(-0.1) 		68.7
(-2.8) 		62.2
(-3) 		247.4
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 81.5
(-0.2)
A 		65
(-2.5)
A 		104.1
(3)
A 		61.1
(-3)
A 		68.8
(-1.9)
A 		71.4
(-1.6)
A 		43
B 58.2
(-0.9)
A 		60.5
(-0.7)
A 		29.1
(-3)
A 		111.1
(3)
A 		85.8
(1.1)
A 		87.1
(1.2)
M 		82
C 98
(3)
A 		88.5
(2.3)
A 		14.3
(-3)
A 		91.7
(2.5)
A 		76
(1.4)
A 		84.8
(2.1)
A 		84
avr 79.2
(1.6) 		71.3
(0.4) 		49.2
(-3) 		88
(3) 		76.9
(1.3) 		81.1
(1.9) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 43
(3)
A 		9
(-3)
A 		14.6
(-2)
A 		34.6
(1.5)
P 		34
B 44.9
(2.3)
P 		16.2
(-2.3)
A 		11.9
(-3)
A 		49
(3)
P 		37
C 64.4
(3)
A 		28.4
(-2.9)
A 		27.8
(-3)
A 		46.5
(0.1)
P 		37
avr 50.8
(3) 		17.9
(-3) 		18.1
(-3) 		43.4
(1.7) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15
(-3)
A 		23.1
(3)
A 		22.7
(2.7)
A 		15.5
(-2.6)
A 		20.8
(1.3)
A 		17.4
(-1.2)
A 		8
B 20.2
(-0.2)
A 		20.1
(-0.2)
A 		7.1
(-3)
A 		29.4
(1.8)
A 		34.9
(3)
A 		32.5
(2.5)
M 		28
C 36.3
(3)
A 		27
(1.3)
A 		3.6
(-3)
A 		18.4
(-0.3)
A 		24.6
(0.9)
A 		28.4
(1.6)
A 		33
avr 23.8
(1.9) 		23.4
(1.7) 		11.1
(-3) 		21.1
(0.8) 		26.8
(3) 		26.1
(2.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17875
Sequence Type Exemplar sequence
Representative Public ID F09A5.3 NCBI
Target Description F09A5.3 /REP_DB=WormBase Gene ID /WP=CE03175 /TR=Q19236 /GB=CAA93645.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077782 NCBI Caenorhabditis elegans F09A5.3 (F09A5.3) mRNA, complete cds. 11/11 None
SNAP00000018918 ENSEMBL cdna:SNAP chromosome:CEL140:X:13150725:13152090:1 9/11 None
GENEFINDER00000018920 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13150725:13152393:1 11/11 None
F09A5.3 ENSEMBL cdna:known chromosome:CEL140:X:13150725:13152393:1 gene:F09A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13150724-13152393(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09A5.3
Entrez Gene 184220 Entrez gene
SwissProt Q19236 EMBL-EBI
WormBase CE03175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93645 Hypothetical protein F09A5.3 [Caenorhabditis elegans] ref|NP_510183.1| F09A5.3 [Caenorhabditis elegans] 1.0E-179
blast CAA93645 Hypothetical protein F09A5.3 [Caenorhabditis elegans] ref|NP_510183.1| F09A5.3 [Caenorhabditis elegans] 1.0E-133
blast CAE61391 Hypothetical protein CBG05243 [Caenorhabditis briggsae] 2.0E-97
blast CAE61391 Hypothetical protein CBG05243 [Caenorhabditis briggsae] 5.0E-67
Sequence
Target Sequence 
>C. ELEGANS:178941_AT
ggatgctcacatgtgcttcatcaagaacagcgtcttccgtgcggcagttgtcatgcagtt
tatttataactgcaccatgagtgtatttagatgttgcagaaatcgcatgcttcatcactt
cctcattgacccgcttggtcgtattattccagaaaacggtgattacgttcacaagataat
caccaacccaagatttcactttgcaaggcttctacgttcgtctcttcgtattttggagca
tgaaattcaacgcattgaatttacaagagagtgtatccacgagtttattcaatttcttaa
tttgcaacttccacaagtcggtcttaccaacaagaacctgaatcaaaaggtcgctttgga
aaagagaactgatctagaagcaattgctaagcagcacagttttctttggaaaaactacaa
gtgctggcacaacaaaaatctcaattttctactcaccacggaaagattgatggcctgcaa
cttgtgcaaaattatccgcatgagagacatgcatgttgttgtgttgaacaactggaccga
cttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCTCACATGTGCTTCATCAAG 32 515 321 Antisense
CATCAAGAACAGCGTCTTCCGTGCG 108 211 339 Antisense
TTCCGTGCGGCAGTTGTCATGCAGT 341 697 355 Antisense
CAGAAATCGCATGCTTCATCACTTC 531 205 417 Antisense
ACCCGCTTGGTCGTATTATTCCAGA 21 91 449 Antisense
TCACCAACCCAAGATTTCACTTTGC 681 625 500 Antisense
TCACTTTGCAAGGCTTCTACGTTCG 248 625 516 Antisense
TCTACGTTCGTCTCTTCGTATTTTG 579 611 531 Antisense
TGCAACTTCCACAAGTCGGTCTTAC 161 577 623 Antisense
AAGATTGATGGCCTGCAACTTGTGC 621 155 783 Antisense
TGTTGAACAACTGGACCGACTTCTC 425 559 842 Antisense
Sequence Source Affymetrix Proprietary Database