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[178940_at]

Description F15A2.5 /REP_DB=WormBase Gene ID /WP=CE05634 /TR=Q19475 /GB=CAA94131.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 05      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 49.3
(-2.2)
A 		35.6
(-3)
A 		60.5
(-1.6)
A 		144.3
(3)
M 		109
B 38.5
(-1)
A 		34.2
(-3)
A 		47.4
(3)
A 		45.7
(2.2)
A 		13
C 107.7
(1.6)
M 		49.1
(-1.6)
A 		23.9
(-3)
A 		132.1
(3)
P 		108
avr 65.2
(-0.7) 		39.6
(-3) 		43.9
(-2.6) 		107.4
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 23.6
(-3)
A 		62.3
(-0.7)
P 		60.6
(-0.8)
A 		57.9
(-1)
A 		126.1
(3)
P 		68.3
(-0.4)
P 		103
B 38.6
(-1.4)
A 		51.9
(-0.2)
P 		50.8
(-0.3)
A 		21.5
(-3)
A 		87.5
(3)
P 		64.1
(0.9)
P 		66
C 36.2
(-3)
A 		65.3
(-1)
P 		41.8
(-2.6)
A 		103.6
(1.7)
P 		122.5
(3)
P 		53.7
(-1.8)
A 		86
avr 32.8
(-3) 		59.8
(-1) 		51.1
(-1.6) 		61
(-0.9) 		112
(3) 		62
(-0.8) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 17.9
(1.6)
A 		7.7
(-3)
A 		15.8
(0.6)
A 		21.1
(3)
M 		13
B 12.3
(3)
A 		8.4
(-3)
A 		11
(1)
A 		9.7
(-1)
A 		4
C 35.6
(3)
M 		14.1
(-1.7)
A 		8.3
(-3)
A 		22.3
(0.1)
P 		27
avr 21.9
(3) 		10.1
(-3) 		11.7
(-2.2) 		17.7
(0.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.4
(-3)
A 		22.2
(0.2)
P 		13.2
(-1.4)
A 		14.7
(-1.2)
A 		38.1
(3)
P 		16.6
(-0.8)
P 		34
B 13.4
(-1.4)
A 		17.3
(-0.7)
P 		12.3
(-1.7)
A 		5.7
(-3)
A 		35.5
(3)
P 		23.9
(0.7)
P 		30
C 13.4
(-2.4)
A 		19.9
(-1.1)
P 		10.6
(-3)
A 		20.8
(-0.9)
P 		39.6
(3)
P 		18
(-1.5)
A 		29
avr 10.4
(-3) 		19.8
(-0.9) 		12
(-2.6) 		13.7
(-2.3) 		37.7
(3) 		19.5
(-1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17791
Sequence Type Exemplar sequence
Representative Public ID F15A2.5 NCBI
Target Description F15A2.5 /REP_DB=WormBase Gene ID /WP=CE05634 /TR=Q19475 /GB=CAA94131.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077849(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077849 NCBI Caenorhabditis elegans Eph(F)riN family member (efn-3) (efn-3) mRNA, complete cds. 10/11 None
GENEFINDER00000028423 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13475993:13477364:-1 10/11 None
F15A2.5 ENSEMBL cdna:known chromosome:CEL140:X:13476022:13476901:-1 gene:F15A2.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028417 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13476021-13476631(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol efn-3
Ensembl F15A2.5
Entrez Gene 184508 Entrez gene
SwissProt Q19475 EMBL-EBI
WormBase CE35485 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94131 Hypothetical protein F15A2.5 [Caenorhabditis elegans] ref|NP_510250.2| Eph(F)riN family member (efn-3) [Caenorhabditis elegans] 2.0E-77
blast CAA94131 Hypothetical protein F15A2.5 [Caenorhabditis elegans] ref|NP_510250.2| Eph(F)riN family member (efn-3) [Caenorhabditis elegans] 6.0E-71
blast CAE63141 Hypothetical protein CBG07443 [Caenorhabditis briggsae] 5.0E-38
blast CAE63141 Hypothetical protein CBG07443 [Caenorhabditis briggsae] 2.0E-23
blast CAB54195 Hypothetical protein C43F9.8 [Caenorhabditis elegans] ref|NP_501955.2| Eph(F)riN family member (efn-2) [Caenorhabditis elegans] 3.0E-19
blast CAB54195 Hypothetical protein C43F9.8 [Caenorhabditis elegans] ref|NP_501955.2| Eph(F)riN family member (efn-2) [Caenorhabditis elegans] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001799 EMBL-EBI Ephrin 8.4E-10
Pfam IPR001799 EMBL-EBI Ephrin 8.4E-10
Sequence
Target Sequence 
>C. ELEGANS:178940_AT
ggtctcagtgttggcttcacgagccagtttggctcggagtttgtgcaaccgaaaattata
cggtgggtttttttccgttttttcagctaagtgctcaacaatatattttcagacagaagt
taaactaatcttccgccaaactaacccaatccctgacggtatggatttccaagttggaaa
aacctactatataatttcgacttctactggtgatattgaaggcataaatcaagcagtcgg
gggactgtgtaagtatcatcatatgaaactggcaatctcggtagttgggtatgaaaagca
gtcgcattcaaaatccgaaatcactgaaaaaaactttgctcatgggatcggatacgaaat
tcatgaagtgggacaactcgtttcctcaggccaccaaaactttacgctcttgaccacaac
gtcactacttttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCTCAGTGTTGGCTTCACGAGCC 330 503 15 Antisense
TTTCCGTTTTTTCAGCTAAGTGCTC 556 667 86 Antisense
CTAACCCAATCCCTGACGGTATGGA 468 225 155 Antisense
AATTTCGACTTCTACTGGTGATATT 375 175 207 Antisense
GTCGGGGGACTGTGTAAGTATCATC 549 471 250 Antisense
ACTGGCAATCTCGGTAGTTGGGTAT 704 95 282 Antisense
AAACTTTGCTCATGGGATCGGATAC 298 123 345 Antisense
GAAGTGGGACAACTCGTTTCCTCAG 598 335 379 Antisense
TCCTCAGGCCACCAAAACTTTACGC 504 591 397 Antisense
AAACTTTACGCTCTTGACCACAACG 141 127 411 Antisense
TGACCACAACGTCACTACTTTTCTG 470 569 425 Antisense
Sequence Source Affymetrix Proprietary Database