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[178938_at]

Description C50B6.9 /REP_DB=WormBase Gene ID /WP=CE08878 /TR=O17690 /GB=CAB02853.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 50      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 31.3
(0.8)
A 		46.8
(3)
A 		44.3
(2.6)
A 		4.7
(-3)
A 		42
B 7.4
(-2.7)
A 		83
(3)
A 		3
(-3)
A 		3.2
(-3)
A 		80
C 9.9
(-3)
A 		14.2
(-2.3)
A 		49.1
(3)
A 		24.9
(-0.7)
A 		39
avr 16.2
(-2.1) 		48
(3) 		32.1
(0.4) 		10.9
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 30.3
(-2.7)
A 		73.9
(-0.7)
A 		92.1
(0.1)
M 		154.5
(3)
P 		90.7
(0.1)
P 		24.7
(-3)
A 		130
B 60.4
(-0.6)
A 		78.4
(0.7)
P 		108.8
(3)
P 		80.6
(0.9)
P 		89.6
(1.6)
P 		28.9
(-3)
A 		80
C 33
(-3)
A 		58.7
(-1.4)
P 		73
(-0.6)
A 		131.4
(3)
P 		82.3
(0)
P 		39.5
(-2.6)
A 		98
avr 41.2
(-2.3) 		70.3
(-0.4) 		91.3
(1) 		122.2
(3) 		87.5
(0.7) 		31
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.4
(2.9)
A 		10.2
(2.2)
A 		11.6
(3)
A 		0.7
(-3)
A 		11
B 2.4
(-2.5)
A 		20.5
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		20
C 3.3
(-3)
A 		4.1
(-2.7)
A 		17.1
(3)
A 		4.2
(-2.6)
A 		14
avr 5.7
(-0.6) 		11.6
(3) 		9.8
(1.9) 		1.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.6
(-3)
A 		26.3
(0.7)
A 		20.1
(-0.4)
M 		39.2
(3)
P 		27.4
(0.9)
P 		6
(-2.9)
A 		34
B 21
(-0.6)
A 		26.1
(0.6)
P 		26.4
(0.7)
P 		21.3
(-0.5)
P 		36.4
(3)
P 		10.8
(-3)
A 		26
C 12.2
(-3)
A 		17.9
(-0.6)
P 		18.6
(-0.3)
A 		26.4
(2.9)
P 		26.6
(3)
P 		13.2
(-2.6)
A 		14
avr 12.9
(-2.1) 		23.4
(1) 		21.7
(0.5) 		29
(2.7) 		30.1
(3) 		10
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12563
Sequence Type Exemplar sequence
Representative Public ID C50B6.9 NCBI
Target Description C50B6.9 /REP_DB=WormBase Gene ID /WP=CE08878 /TR=O17690 /GB=CAB02853.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073905 NCBI Caenorhabditis elegans C50B6.9 (C50B6.9) mRNA, complete cds. 11/11 None
SNAP00000011270 ENSEMBL cdna:SNAP chromosome:CEL140:V:13338966:13340499:1 11/11 None
GENEFINDER00000011296 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13338966:13340499:1 11/11 None
C50B6.9 ENSEMBL cdna:known chromosome:CEL140:V:13339925:13340499:1 gene:C50B6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13339924-13340499(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50B6.9
Entrez Gene 183636 Entrez gene
SwissProt O17690 EMBL-EBI
WormBase CE08878 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02853 Hypothetical protein C50B6.9 [Caenorhabditis elegans] ref|NP_506306.1| C50B6.9 [Caenorhabditis elegans] 3.0E-84
blast CAB02853 Hypothetical protein C50B6.9 [Caenorhabditis elegans] ref|NP_506306.1| C50B6.9 [Caenorhabditis elegans] 1.0E-83
blast CAE62617 Hypothetical protein CBG06738 [Caenorhabditis briggsae] 8.0E-58
blast CAE62617 Hypothetical protein CBG06738 [Caenorhabditis briggsae] 3.0E-57
blast CAE62617 Hypothetical protein CBG06738 [Caenorhabditis briggsae] 4.0E-57
blast NP_360101 similarity to hydrolase [Rickettsia conorii str. Malish 7] gb|AAL03002.1| similarity to hydrolase [Rickettsia conorii str. Malish 7] pir||H97757 hydrolase homolog [imported] - Rickettsia conorii (strain Malish 7) 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:178938_AT
gattgcgggactgtttctaatgtgtccaggatctggtctggatatgaatttcgtgaatac
aattcaacctggagctctacaatatcttatgaagaaaggatccattaactatccggcttc
aaaaaatggttatccagcattactcactgtggaatgtctcgaagaatttttaaatacaga
tatctccaaaacttcaccaaaagtaatcgatatacaatgcccagttctcacggttcatgg
aattgaagacaatattgttcctgtcgagaattcaaagaaactgatgcaacgaatggcatc
gacgtacaaagatttccatcgaattcctggtgttgatcataatttcgacttggacgaaga
ggttttgaagcgactcggacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCGGGACTGTTTCTAATGTGT 628 433 42 Antisense
TCAACCTGGAGCTCTACAATATCTT 352 631 105 Antisense
ATCCATTAACTATCCGGCTTCAAAA 261 31 141 Antisense
GGTTATCCAGCATTACTCACTGTGG 453 505 169 Antisense
TACTCACTGTGGAATGTCTCGAAGA 72 647 182 Antisense
AGATATCTCCAAAACTTCACCAAAA 695 65 219 Antisense
CGATATACAATGCCCAGTTCTCACG 639 247 249 Antisense
CCCAGTTCTCACGGTTCATGGAATT 152 259 261 Antisense
GCATCGACGTACAAAGATTTCCATC 703 309 337 Antisense
GATTTCCATCGAATTCCTGGTGTTG 707 427 352 Antisense
GAGGTTTTGAAGCGACTCGGACAAT 315 401 400 Antisense
Sequence Source Affymetrix Proprietary Database