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[178937_at]

Description F17A2.7 /REP_DB=WormBase Gene ID /WP=CE03217 /TR=Q19505 /GB=CAA92155.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 33.6
(-2.7)
A 		25.1
(-3)
A 		33.6
(-2.7)
A 		201
(3)
P 		176
B 23.1
(-2.9)
A 		33.8
(-2.5)
A 		20.4
(-3)
A 		197.9
(3)
P 		178
C 40.7
(-2.1)
A 		8.1
(-3)
A 		37.7
(-2.2)
A 		220.9
(3)
P 		213
avr 32.5
(-2.7) 		22.3
(-3) 		30.6
(-2.7) 		206.6
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 35.1
(-0.9)
A 		20.7
(-1.9)
A 		5.2
(-3)
A 		7.9
(-2.8)
A 		44.5
(-0.2)
P 		88.7
(3)
P 		84
B 17.6
(-2.9)
A 		28.9
(-2)
A 		32.9
(-1.8)
A 		16
(-3)
A 		60.6
(0.3)
P 		97.3
(3)
P 		81
C 5.8
(-3)
A 		33.1
(-0.4)
A 		22
(-1.5)
A 		49.4
(1.1)
A 		36.5
(-0.1)
A 		68.9
(3)
P 		63
avr 19.5
(-3) 		27.6
(-2.3) 		20
(-3) 		24.4
(-2.6) 		47.2
(-0.5) 		85
(3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 12.2
(-1.3)
A 		5.4
(-3)
A 		8.8
(-2.2)
A 		29.4
(3)
P 		24
B 7.4
(-2.6)
A 		8.3
(-2.4)
A 		4.7
(-3)
A 		42.2
(3)
P 		38
C 13.5
(-1.1)
A 		2.3
(-3)
A 		13.1
(-1.1)
A 		37.2
(3)
P 		35
avr 11
(-1.9) 		5.3
(-3) 		8.9
(-2.3) 		36.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.5
(-1.4)
A 		7.4
(-1.2)
A 		1.1
(-3)
A 		2
(-2.7)
A 		13.4
(0.6)
P 		21.6
(3)
P 		21
B 6.1
(-2.6)
A 		9.6
(-2)
A 		8
(-2.3)
A 		4.2
(-3)
A 		24.6
(0.8)
P 		36.3
(3)
P 		32
C 2.1
(-3)
A 		10.1
(-0.7)
A 		5.6
(-2)
A 		9.9
(-0.8)
A 		11.8
(-0.2)
A 		23.1
(3)
P 		21
avr 4.9
(-3) 		9
(-1.9) 		4.9
(-3) 		5.4
(-2.9) 		16.6
(0.2) 		27
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16896
Sequence Type Exemplar sequence
Representative Public ID F17A2.7 NCBI
Target Description F17A2.7 /REP_DB=WormBase Gene ID /WP=CE03217 /TR=Q19505 /GB=CAA92155.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077663 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-45) (srd-45) mRNA, complete cds. 11/11 None
GENEFINDER00000014139 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12329107:12330447:1 11/11 None
F17A2.7 ENSEMBL cdna:known chromosome:CEL140:X:12328897:12330447:1 gene:F17A2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12328896-12330447(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-45
Ensembl F17A2.7
Entrez Gene 184603 Entrez gene
SwissProt Q19505 EMBL-EBI
WormBase CE03217 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92155 Hypothetical protein F17A2.7 [Caenorhabditis elegans] ref|NP_510064.1| Serpentine Receptor, class D (delta) family member (srd-45) [Caenorhabditis elegans] sp|Q19505|SRD45_CAEEL Serpentine receptor class delta-45 (Protein srd-45) 1.0E-165
blast CAA92155 Hypothetical protein F17A2.7 [Caenorhabditis elegans] ref|NP_510064.1| Serpentine Receptor, class D (delta) family member (srd-45) [Caenorhabditis elegans] sp|Q19505|SRD45_CAEEL Serpentine receptor class delta-45 (Protein srd-45) 1.0E-136
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 2.0E-72
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 3.0E-69
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 4.0E-57
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 7.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510064.1 7 10-29,41-63,92-114,126-148,182-204,228-250,265-287
F17A2.7 7 10-29,41-63,92-114,126-148,182-204,228-250,265-287
GENEFINDER00000014139 5 15-37,57-79,112-134,158-180,195-217
Sequence
Target Sequence 
>C. ELEGANS:178937_AT
tgggtgcacaaactagtctcatcctaacggaagggataccatctgaaaatcaggaccatc
ttgaaaaaattaattttgatatctctgatcatgcagttattggttacattcgtttgaaaa
ctctacccagcattataattacatttgtgataactggaacaattttaatactgccagctg
tgggattattattgaggaagaaaacgctgcgcaacataaactcaaataagttctccatca
ccaagaaagctttaataaaaggttttattaacggtgtcacactccaagtgttcctcccat
taatttgctacattccggtttttggaagttttcttgtgctagccgaaacaaagacggaag
ttccttttgaacaatatttcttctcagtattggttatgttaccaatgttatttgatccgt
acattatactttactccgtggctccttaccgaaagcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGTGCACAAACTAGTCTCATCCT 474 553 431 Antisense
TCGTTTGAAAACTCTACCCAGCATT 607 601 540 Antisense
AATACTGCCAGCTGTGGGATTATTA 112 173 597 Antisense
AAAACGCTGCGCAACATAAACTCAA 519 131 631 Antisense
ACTCAAATAAGTTCTCCATCACCAA 590 99 650 Antisense
ACGGTGTCACACTCCAAGTGTTCCT 613 95 701 Antisense
TGTTCCTCCCATTAATTTGCTACAT 146 563 719 Antisense
TAATTTGCTACATTCCGGTTTTTGG 156 635 731 Antisense
TGGAAGTTTTCTTGTGCTAGCCGAA 379 547 753 Antisense
TACATTATACTTTACTCCGTGGCTC 444 643 850 Antisense
TCCGTGGCTCCTTACCGAAAGCAAA 5 595 865 Antisense
Sequence Source Affymetrix Proprietary Database