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[178935_at]

Description F07D3.3 /REP_DB=WormBase Gene ID /WP=CE05568 /TR=Q19164 /GB=CAA94888.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 11      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 3.6
(-3)
A 		31.2
(-1.5)
A 		4.4
(-3)
A 		114
(3)
A 		110
B 57.4
(3)
A 		14.8
(-2.1)
A 		6.9
(-3)
A 		53.8
(2.6)
A 		51
C 10.8
(-2.7)
A 		13
(-2.6)
A 		2.8
(-3)
A 		151.9
(3)
P 		149
avr 23.9
(-1.9) 		19.7
(-2.1) 		4.7
(-3) 		106.6
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 7.1
(-3)
A 		9.6
(-2.6)
A 		37.6
(2.3)
A 		37.9
(2.3)
A 		21.3
(-0.5)
A 		41.8
(3)
A 		35
B 11.7
(-2.1)
A 		18
(-1.4)
A 		4.1
(-3)
A 		25
(-0.7)
A 		57.7
(3)
A 		48.3
(1.9)
A 		54
C 7.8
(-2.5)
A 		50.6
(3)
A 		4.1
(-3)
A 		6.6
(-2.7)
A 		31
(0.5)
A 		34.6
(0.9)
A 		47
avr 8.9
(-3) 		26.1
(0.2) 		15.3
(-1.8) 		23.2
(-0.4) 		36.7
(2.1) 		41.6
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.3
(-3)
A 		6.8
(-0.8)
A 		1.2
(-3)
A 		16.7
(3)
A 		16
B 18.3
(3)
A 		3.7
(-2.2)
A 		1.6
(-3)
A 		11.5
(0.6)
A 		17
C 3.6
(-2.4)
A 		3.7
(-2.3)
A 		1
(-3)
A 		25.6
(3)
P 		25
avr 7.7
(-0.7) 		4.7
(-1.8) 		1.3
(-3) 		17.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.4
(-1.6)
A 		8.2
(1.7)
A 		9.6
(2.6)
A 		6.4
(0.4)
A 		10.2
(3)
A 		9
B 4.1
(-2.2)
A 		6
(-1.7)
A 		1
(-3)
A 		6.6
(-1.5)
A 		23.5
(3)
A 		18
(1.5)
A 		23
C 2.9
(-2.2)
A 		15.4
(3)
A 		1
(-3)
A 		1.3
(-2.9)
A 		10
(0.8)
A 		11.6
(1.4)
A 		14
avr 2.8
(-3) 		8.3
(0.1) 		3.4
(-2.7) 		5.8
(-1.3) 		13.3
(3) 		13.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12099
Sequence Type Exemplar sequence
Representative Public ID F07D3.3 NCBI
Target Description F07D3.3 /REP_DB=WormBase Gene ID /WP=CE05568 /TR=Q19164 /GB=CAA94888.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073042 NCBI Caenorhabditis elegans F07D3.3 (F07D3.3) mRNA, complete cds. 11/11 None
SNAP00000004769 ENSEMBL cdna:SNAP chromosome:CEL140:V:9463270:9465220:-1 9/11 None
GENEFINDER00000004773 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9463270:9465220:-1 11/11 None
F07D3.3 ENSEMBL cdna:known chromosome:CEL140:V:9464256:9465220:-1 gene:F07D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9464255-9465220(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07D3.3
Entrez Gene 184140 Entrez gene
SwissProt Q19164 EMBL-EBI
WormBase CE05568 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94888 Hypothetical protein F07D3.3 [Caenorhabditis elegans] ref|NP_505443.1| F07D3.3 [Caenorhabditis elegans] 1.0E-116
blast CAA94888 Hypothetical protein F07D3.3 [Caenorhabditis elegans] ref|NP_505443.1| F07D3.3 [Caenorhabditis elegans] 1.0E-115
blast CAA94888 Hypothetical protein F07D3.3 [Caenorhabditis elegans] ref|NP_505443.1| F07D3.3 [Caenorhabditis elegans] 1.0E-102
blast CAE72173 Hypothetical protein CBG19280 [Caenorhabditis briggsae] 1.0E-76
blast CAE72173 Hypothetical protein CBG19280 [Caenorhabditis briggsae] 1.0E-68
blast CAE72173 Hypothetical protein CBG19280 [Caenorhabditis briggsae] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:178935_AT
gtcccaatgaacttcgatttctcacatattgataatttgatatgcaatacatatcccacg
ccaattcaactaagaaaatcgcctactagaaacgagacatcgatcaacgctttctaccaa
tactcgtcatttgtagatgcccgcaatgccttgagaattctgaatggagcagtggtaccc
ggaatggagaatcattatcaattagatatgaatttcacaaaacaacgcgttgaagcttgc
gctcatataacaatcagctttgttcactttaatcgttttgaagtcatgaagttgttttca
cgttactcatcagttttgggtctgtcacaatataatttcaaactctggaatgggtcagtg
ccaaggacaacaagctttattcggtttcgagatcaggatgagtgtatgcaggctgttcaa
gaactcaataatattcctgtagaagacagtgtgatccacatgactatatcaactcggttc
attgattccctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCAATGAACTTCGATTTCTCAC 582 475 67 Antisense
TATCCCACGCCAATTCAACTAAGAA 234 659 118 Antisense
GAGACATCGATCAACGCTTTCTACC 376 393 160 Antisense
AACGCTTTCTACCAATACTCGTCAT 28 145 172 Antisense
TACTCGTCATTTGTAGATGCCCGCA 221 647 187 Antisense
GATGCCCGCAATGCCTTGAGAATTC 123 415 202 Antisense
GGAGCAGTGGTACCCGGAATGGAGA 211 521 232 Antisense
ACAACGCGTTGAAGCTTGCGCTCAT 476 113 288 Antisense
ATCAGCTTTGTTCACTTTAATCGTT 614 27 319 Antisense
GTTGTTTTCACGTTACTCATCAGTT 114 435 357 Antisense
TCAACTCGGTTCATTGATTCCCTGA 252 631 535 Antisense
Sequence Source Affymetrix Proprietary Database