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[178934_at]

Description D2005.2 /REP_DB=WormBase Gene ID /WP=CE09066 /TR=Q93409 /GB=CAB02079.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 10      6grp_total > 16      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1659
1 2 3 4 range
A 2194.1
(3)
P 		609
(-2.9)
P 		588.4
(-3)
P 		1989.9
(2.2)
P 		1606
B 1872.8
(2.6)
P 		842
(-1.7)
P 		535.4
(-3)
P 		1964.4
(3)
P 		1429
C 2169.8
(3)
P 		751.5
(-2.4)
P 		587.7
(-3)
P 		2024.1
(2.4)
P 		1582
avr 2078.9
(3) 		734.2
(-2.3) 		570.5
(-3) 		1992.8
(2.7) 		1508

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1222
1 2 3 4 5 6 range
A 1733.6
(3)
P 		1509.5
(1.4)
P 		1167.4
(-1.1)
P 		980.9
(-2.4)
P 		918.4
(-2.8)
P 		897.3
(-3)
P 		836
B 2037.6
(3)
P 		1691.2
(1.2)
P 		874.1
(-3)
P 		1045.3
(-2.1)
P 		948.7
(-2.6)
P 		1081.2
(-1.9)
P 		1164
C 2095.7
(3)
P 		1530
(0.2)
P 		1119.2
(-1.8)
P 		900
(-2.9)
P 		884.5
(-3)
P 		889.1
(-3)
P 		1211
avr 1955.6
(3) 		1576.9
(0.8) 		1053.6
(-2.2) 		975.4
(-2.7) 		917.2
(-3) 		955.9
(-2.8) 		1038
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 675
1 2 3 4 range
A 798.9
(3)
P 		132.2
(-3)
P 		153.8
(-2.8)
P 		291.3
(-1.6)
P 		667
B 597.2
(3)
P 		208
(-1.9)
P 		124.1
(-3)
P 		418.6
(0.7)
P 		473
C 718.3
(3)
P 		216
(-2.9)
P 		204.8
(-3)
P 		341.3
(-1.4)
P 		514
avr 704.8
(3) 		185.4
(-2.7) 		160.9
(-3) 		350.4
(-0.9) 		544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 319.6
(-1.1)
P 		536.9
(3)
P 		254.2
(-2.3)
P 		248.8
(-2.4)
P 		277.1
(-1.9)
P 		218.5
(-3)
P 		318
B 709
(3)
P 		562.9
(1.2)
P 		212.2
(-3)
P 		276.9
(-2.2)
P 		385.4
(-0.9)
P 		403.2
(-0.7)
P 		497
C 776.8
(3)
P 		466.9
(-0.1)
P 		284.9
(-2)
P 		181
(-3)
P 		286.2
(-1.9)
P 		297.6
(-1.8)
P 		596
avr 601.8
(3) 		522.2
(1.7) 		250.4
(-2.8) 		235.6
(-3) 		316.2
(-1.7) 		306.4
(-1.8) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.379
Sequence Type Exemplar sequence
Representative Public ID D2005.2 NCBI
Target Description D2005.2 /REP_DB=WormBase Gene ID /WP=CE09066 /TR=Q93409 /GB=CAB02079.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059757 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-8) (nlp-8) mRNA, complete cds. 11/11 None
SNAP00000018864 ENSEMBL cdna:SNAP chromosome:CEL140:I:7808890:7809934:-1 11/11 None
GENEFINDER00000018869 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7808890:7809934:-1 10/11 None
D2005.2 ENSEMBL cdna:known chromosome:CEL140:I:7808606:7809948:-1 gene:D2005.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7808820-7809865(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-8
Ensembl D2005.2
Entrez Gene 172544 Entrez gene
SwissProt Q93409 EMBL-EBI
WormBase CE09066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02079 Hypothetical protein D2005.2 [Caenorhabditis elegans] ref|NP_492158.1| Neuropeptide-Like Protein family member (nlp-8) [Caenorhabditis elegans] 4.0E-83
blast CAB02079 Hypothetical protein D2005.2 [Caenorhabditis elegans] ref|NP_492158.1| Neuropeptide-Like Protein family member (nlp-8) [Caenorhabditis elegans] 1.0E-76
blast CAE63745 Hypothetical protein CBG08277 [Caenorhabditis briggsae] 7.0E-68
blast CAE63745 Hypothetical protein CBG08277 [Caenorhabditis briggsae] 2.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492158.1 1 13-35
D2005.2 1 13-35
SNAP00000018864 1 13-35
GENEFINDER00000018869 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:178934_AT
tcaactgctctttctgcagtgccttcttatcggctttactgccgcctacccctacctgat
ctttcctgcttcaccgtcctccggtgactctcgacgtcttgtaaagcgggcatttgatcg
tttcgacaactctggtgtcttctcatttggagccaaacgattcgatcgttatgatgatga
gacagcgtacggatatggattcgataatcatatattcaaaagatcagctgatccataccg
tttcatgtcagttccgacaaaaaaggcatttgatagaatggataacagtgatttctttgg
tgcaaagaggaaacgatcattcgatagaatgggaggaactgaattcgggttgatgaaacg
aagtgctccagagagtagagaacaattaatcaacaatctcgctgaatcaatcattactct
tcgacgagcccgcgaagccgaatcatcacctgaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTGCTCTTTCTGCAGTGCCTT 273 631 45 Antisense
AGTGCCTTCTTATCGGCTTTACTGC 250 59 62 Antisense
GGTGACTCTCGACGTCTTGTAAAGC 306 501 127 Antisense
AAAGCGGGCATTTGATCGTTTCGAC 275 125 147 Antisense
GTTTCGACAACTCTGGTGTCTTCTC 701 447 164 Antisense
GGTGTCTTCTCATTTGGAGCCAAAC 132 501 178 Antisense
TCAGCTGATCCATACCGTTTCATGT 420 625 268 Antisense
TACCGTTTCATGTCAGTTCCGACAA 183 649 280 Antisense
GGATAACAGTGATTTCTTTGGTGCA 519 511 324 Antisense
TCAATCATTACTCTTCGACGAGCCC 109 633 451 Antisense
CGAAGCCGAATCATCACCTGAAAGT 542 251 477 Antisense
Sequence Source Affymetrix Proprietary Database