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[178933_at]

Description T23D5.3 /REP_DB=WormBase Gene ID /WP=CE16445 /TR=O45804 /GB=CAB04816.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 7.8
(-3)
A 		19.7
(2.9)
A 		13.1
(-0.4)
A 		20
(3)
A 		12
B 14.5
(-2.5)
A 		13.5
(-3)
A 		13.4
(-3)
A 		26.1
(3)
A 		13
C 10.9
(-2.8)
A 		39.5
(3)
A 		9.7
(-3)
A 		38.9
(2.9)
A 		30
avr 11.1
(-3) 		24.2
(1.6) 		12.1
(-2.7) 		28.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.4
(-1.7)
A 		15.1
(-0.6)
A 		10.3
(-2)
A 		17.2
(0)
A 		27
(3)
A 		7.1
(-3)
A 		20
B 10.5
(-2.5)
A 		12.6
(-1.9)
A 		8.8
(-3)
A 		29.5
(3)
A 		12.8
(-1.8)
A 		11.1
(-2.3)
A 		21
C 9.7
(-1.9)
A 		17.8
(0.4)
A 		11
(-1.5)
A 		26.9
(3)
A 		7.8
(-2.4)
A 		5.7
(-3)
A 		21
avr 10.5
(-2.1) 		15.2
(-0.4) 		10
(-2.3) 		24.5
(3) 		15.9
(-0.1) 		8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.9
(-3)
A 		4.3
(3)
A 		3.4
(-0.9)
A 		2.9
(-3)
A 		1
B 4.6
(0.6)
A 		3.3
(-2.5)
A 		3.1
(-3)
A 		5.6
(3)
A 		3
C 3.6
(-2.9)
A 		11.4
(3)
A 		3.4
(-3)
A 		6.6
(-0.6)
A 		8
avr 3.7
(-2.2) 		6.3
(3) 		3.3
(-3) 		5
(0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.1
(-2.6)
A 		5.4
(0.5)
A 		2.2
(-2.5)
A 		4.4
(-0.5)
A 		8.1
(3)
A 		1.7
(-3)
A 		6
B 3.7
(-1.3)
A 		4.2
(-0.8)
A 		2.1
(-3)
A 		7.8
(3)
A 		5.2
(0.3)
A 		4.1
(-0.9)
A 		6
C 3.6
(-0.1)
A 		5.4
(3)
A 		2.8
(-1.5)
A 		5.4
(3)
A 		2.5
(-2)
A 		1.9
(-3)
A 		4
avr 3.1
(-1.8) 		5
(1.5) 		2.4
(-3) 		5.9
(3) 		5.3
(2) 		2.6
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13344
Sequence Type Exemplar sequence
Representative Public ID T23D5.3 NCBI
Target Description T23D5.3 /REP_DB=WormBase Gene ID /WP=CE16445 /TR=O45804 /GB=CAB04816.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074516 NCBI Caenorhabditis elegans T23D5.3 (T23D5.3) mRNA, complete cds. 11/11 None
SNAP00000041583 ENSEMBL cdna:SNAP chromosome:CEL140:V:15735447:15736132:-1 9/11 None
GENEFINDER00000041597 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15733946:15736132:-1 9/11 None
T23D5.3 ENSEMBL cdna:known chromosome:CEL140:V:15735447:15736252:-1 gene:T23D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15735446-15736252(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23D5.3
Entrez Gene 188784 Entrez gene
SwissProt O45804 EMBL-EBI
WormBase CE16445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04816 Hypothetical protein T23D5.3 [Caenorhabditis elegans] ref|NP_506917.1| T23D5.3 [Caenorhabditis elegans] 5.0E-89
blast CAB04822 Hypothetical protein T23D5.2 [Caenorhabditis elegans] emb|CAA15973.2| Hypothetical protein T23D5.2 [Caenorhabditis elegans] ref|NP_506916.2| Seven TM Receptor family member (str-38) [Caenorhabditis elegans] 1.0E-59
blast CAB04816 Hypothetical protein T23D5.3 [Caenorhabditis elegans] ref|NP_506917.1| T23D5.3 [Caenorhabditis elegans] 3.0E-52
blast CAB04816 Hypothetical protein T23D5.3 [Caenorhabditis elegans] ref|NP_506917.1| T23D5.3 [Caenorhabditis elegans] 4.0E-47
blast CAE66305 Hypothetical protein CBG11555 [Caenorhabditis briggsae] 3.0E-46
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.7E-13
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.7E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506917.1 1 15-37
T23D5.3 1 15-37
GENEFINDER00000041597 2 194-216,229-251
Sequence
Target Sequence 
>C. ELEGANS:178933_AT
gtattcgaatgatcccgccggaagatgtcgggatcccaggcacactgccggataatgatc
caggggatcctatcaaaacgacgattgcagcaggaatacagactacacaatgtaccacat
gtggcccaaaaactactcctcaacgcgttgagccggtgatgacgacgacggtggctcctg
gagcaacgactgtaagatctcccgggtcagtgacgactgctggatcagccacaactgcag
gatctgccaccacaggaagcccttcagcagcaacaactgcggcgacagtggcggcaccac
cgaccacaacagctgcggtaagtattcttacactcaaatctgctttcttatatgttacca
aaccgttccagccgcttccatgccaaacctgcaccccattcatgaatttcatggatgaga
gatacacgtgtacccccacgactggcatgaccgctaccggatgctcaaccctcgccgttt
cttgcatgataaacccctcattcgaatgcaatgacatagcactgctcttggaaaccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCGAATGATCCCGCCGGAAGA 385 451 149 Antisense
AAGATGTCGGGATCCCAGGCACACT 330 155 170 Antisense
CATGTGGCCCAAAAACTACTCCTCA 233 207 266 Antisense
CAACGACTGTAAGATCTCCCGGGTC 494 187 332 Antisense
TCCCGGGTCAGTGACGACTGCTGGA 360 595 348 Antisense
TCAGCCACAACTGCAGGATCTGCCA 641 625 373 Antisense
TCTTACACTCAAATCTGCTTTCTTA 129 617 474 Antisense
TATATGTTACCAAACCGTTCCAGCC 37 661 497 Antisense
CCTGCACCCCATTCATGAATTTCAT 267 267 536 Antisense
ATGAGAGATACACGTGTACCCCCAC 445 45 563 Antisense
CATAGCACTGCTCTTGGAAACCACT 71 213 663 Antisense
Sequence Source Affymetrix Proprietary Database