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[178932_at]

Description C17E4.3 /REP_DB=WormBase Gene ID /WP=CE08252 /TR=Q93227 /GB=CAB02744.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 35.2
(-3)
A 		75.8
(0.2)
A 		112.2
(3)
A 		104
(2.4)
P 		77
B 101.4
(3)
A 		82.9
(-0.3)
A 		68
(-3)
A 		84.6
(-0)
P 		33
C 77.8
(-1.3)
A 		72.6
(-2.2)
A 		68.2
(-3)
A 		101.3
(3)
P 		33
avr 71.5
(-3) 		77.1
(-1.7) 		82.8
(-0.3) 		96.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1063
1 2 3 4 5 6 range
A 2.9
(-3)
A 		28.4
(-2.8)
A 		56.1
(-2.7)
A 		130.7
(-2.2)
P 		412.3
(-0.4)
P 		933.3
(3)
P 		930
B 24.4
(-3)
A 		56.6
(-2.8)
A 		41.5
(-2.9)
A 		105.7
(-2.5)
P 		504.7
(-0.2)
P 		1066.1
(3)
P 		1042
C 36.6
(-2.9)
A 		17.9
(-3)
A 		25.8
(-2.9)
A 		138.3
(-2.1)
P 		387.9
(-0.3)
P 		840.7
(3)
P 		823
avr 21.3
(-3) 		34.3
(-2.9) 		41.1
(-2.9) 		124.9
(-2.3) 		435
(-0.3) 		946.7
(3) 		925
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.8
(-3)
A 		16.5
(-1.7)
A 		29.3
(3)
A 		15.2
(-2.1)
P 		17
B 32.3
(3)
A 		20.5
(-1.3)
A 		15.8
(-3)
A 		18
(-2.2)
P 		17
C 25.8
(3)
A 		20.9
(-0.4)
A 		23.8
(1.6)
A 		17.1
(-3)
P 		9
avr 23.6
(3) 		19.3
(-0.8) 		23
(2.5) 		16.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 0.5
(-3)
A 		10.1
(-2.7)
A 		12.2
(-2.7)
A 		33.2
(-2.1)
P 		124.4
(0.3)
P 		227.2
(3)
P 		227
B 8.5
(-3)
A 		18.8
(-2.8)
A 		10.1
(-3)
A 		28
(-2.7)
P 		205.1
(0)
P 		397.5
(3)
P 		389
C 13.6
(-2.8)
A 		5.5
(-3)
A 		6.6
(-3)
A 		27.8
(-2.5)
P 		125.5
(-0.4)
P 		281.4
(3)
P 		276
avr 7.5
(-3) 		11.5
(-2.9) 		9.6
(-3) 		29.7
(-2.5) 		151.7
(-0.1) 		302
(3) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1090
Sequence Type Exemplar sequence
Representative Public ID C17E4.3 NCBI
Target Description C17E4.3 /REP_DB=WormBase Gene ID /WP=CE08252 /TR=Q93227 /GB=CAB02744.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060101(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060101 NCBI Caenorhabditis elegans C17E4.3 (C17E4.3) mRNA, complete cds. 9/11 None
SNAP00000000949 ENSEMBL cdna:SNAP chromosome:CEL140:I:9425024:9426997:-1 9/11 None
GENEFINDER00000000961 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9425024:9426997:-1 9/11 None
C17E4.3 ENSEMBL cdna:known chromosome:CEL140:I:9425024:9426997:-1 gene:C17E4.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9424954-9426928(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E4.3
Entrez Gene 172767 Entrez gene
SwissProt Q93227 EMBL-EBI
WormBase CE37199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02744 Hypothetical protein C17E4.3 [Caenorhabditis elegans] ref|NP_492502.2| C17E4.3 [Caenorhabditis elegans] 0.0
blast CAE60183 Hypothetical protein CBG03739 [Caenorhabditis briggsae] 1.0E-155
blast AAH79935 MGC79586 protein [Xenopus tropicalis] ref|NP_001007499.1| MGC79586 protein [Xenopus tropicalis] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.5E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492502.2 2 102-124,156-178
C17E4.3 2 102-124,156-178
SNAP00000000949 2 102-124,156-178
GENEFINDER00000000961 2 102-124,156-178
Sequence
Target Sequence 
>C. ELEGANS:178932_AT
tcctcgacgccacagatgtatgcagaaaaacttgaaaagttgacactatcaccgattgga
ctggacgacttattcgccaattcgcgagcaacgtcgactagaagagaatctggaatttca
ccagaatcatcgtctcgccgagacatgcgaagtttaatattttgtagaacaccacaaacc
accactctgaatcatcttcaaaaaagtataaaattgctaattcaacattacttgagacca
tttcatcaaagaataaataacaaaaactttgttcagaagttggcgaggatttggtcccgg
actttggttccaattttggcccaagtttatctaaccaagtttattcacctaaaaaattta
aaggaacacaagaaattattaaaaacccattccgtctattctgtgtgctcctcgtttggt
accggtgtcatgtcatgttctactccagttgctgataacaatctccgaacacttactcca
tcaccgatttctctctccacgttcaaatcaggctgtccaactgagccagtggttgcgatc
aatctcaatgactctggagacactgtaactattgattcgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCGACGCCACAGATGTATGCAG 336 593 910 Antisense
GACACTATCACCGATTGGACTGGAC 180 367 951 Antisense
TGGACGACTTATTCGCCAATTCGCG 398 545 971 Antisense
GAAGTTGGCGAGGATTTGGTCCCGG 419 319 1185 Antisense
TAAAAACCCATTCCGTCTATTCTGT 138 641 1289 Antisense
CTCGTTTGGTACCGGTGTCATGTCA 403 221 1320 Antisense
TCATGTCATGTTCTACTCCAGTTGC 554 621 1337 Antisense
ATAACAATCTCCGAACACTTACTCC 366 23 1364 Antisense
TCCACGTTCAAATCAGGCTGTCCAA 300 583 1405 Antisense
GAGCCAGTGGTTGCGATCAATCTCA 533 385 1432 Antisense
GACACTGTAACTATTGATTCGCAAC 322 367 1468 Antisense
Sequence Source Affymetrix Proprietary Database