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[178930_at]

Description F19H8.2 /REP_DB=WormBase Gene ID /WP=CE15871 /TR=O45378 /GB=CAB07582.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 32      6grp_total > 33      4grp_total > 50      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2611
1 2 3 4 range
A 564
(-2.1)
P 		2776.1
(3)
P 		2106.1
(1.5)
P 		165.6
(-3)
A 		2611
B 634.9
(-2)
P 		2543.2
(3)
P 		2359.7
(2.5)
P 		235.1
(-3)
P 		2308
C 715.2
(-1.6)
P 		2339.1
(3)
P 		2173.4
(2.5)
P 		225.2
(-3)
P 		2114
avr 638
(-1.9) 		2552.8
(3) 		2213.1
(2.1) 		208.6
(-3) 		2344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1642
1 2 3 4 5 6 range
A 1774.6
(3)
P 		1110.8
(0.3)
P 		1581.3
(2.2)
P 		1351.6
(1.3)
P 		669.7
(-1.5)
P 		290.4
(-3)
P 		1484
B 1880.4
(3)
P 		778.3
(-1)
P 		1688.9
(2.3)
P 		1298.3
(0.9)
P 		722.6
(-1.3)
P 		246.5
(-3)
P 		1634
C 1888.4
(3)
P 		755.1
(-1.4)
P 		1812.7
(2.7)
P 		1227.6
(0.4)
P 		545.5
(-2.2)
P 		352.5
(-3)
P 		1536
avr 1847.8
(3) 		881.4
(-0.7) 		1694.3
(2.4) 		1292.5
(0.9) 		645.9
(-1.6) 		296.5
(-3) 		1551
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 733
1 2 3 4 range
A 205.4
(-1.1)
P 		602.6
(3)
P 		550.6
(2.5)
P 		24.2
(-3)
A 		578
B 202.5
(-1.4)
P 		628.1
(3)
P 		546.8
(2.2)
P 		50.1
(-3)
P 		578
C 236.7
(-1.3)
P 		672.5
(2.3)
P 		757.5
(3)
P 		38
(-3)
P 		720
avr 214.9
(-1.2) 		634.4
(3) 		618.3
(2.8) 		37.4
(-3) 		597

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 327.1
(1.7)
P 		395.1
(3)
P 		344.4
(2.1)
P 		342.8
(2)
P 		202.1
(-0.6)
P 		70.7
(-3)
P 		324
B 654.3
(3)
P 		259.1
(-1.2)
P 		410.1
(0.4)
P 		343.9
(-0.3)
P 		293.6
(-0.8)
P 		91.9
(-3)
P 		562
C 700
(3)
P 		230.4
(-1.8)
P 		461.4
(0.5)
P 		246.9
(-1.7)
P 		176.5
(-2.4)
P 		118
(-3)
P 		582
avr 560.5
(3) 		294.9
(-0.4) 		405.3
(1) 		311.2
(-0.2) 		224.1
(-1.3) 		93.5
(-3) 		467
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3768
Sequence Type Exemplar sequence
Representative Public ID F19H8.2 NCBI
Target Description F19H8.2 /REP_DB=WormBase Gene ID /WP=CE15871 /TR=O45378 /GB=CAB07582.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064635 NCBI Caenorhabditis elegans F19H8.2 (F19H8.2) mRNA, complete cds. 11/11 None
SNAP00000003958 ENSEMBL cdna:SNAP chromosome:CEL140:II:14604097:14605509:-1 9/11 None
GENEFINDER00000003967 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14604097:14605509:-1 11/11 None
F19H8.2 ENSEMBL cdna:known chromosome:CEL140:II:14604097:14605509:-1 gene:F19H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14604093-14605506(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19H8.2
Entrez Gene 184702 Entrez gene
SwissProt O45378 EMBL-EBI
WormBase CE15871 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07582 Hypothetical protein F19H8.2 [Caenorhabditis elegans] ref|NP_497036.1| F19H8.2 [Caenorhabditis elegans] 1.0E-162
blast CAB07582 Hypothetical protein F19H8.2 [Caenorhabditis elegans] ref|NP_497036.1| F19H8.2 [Caenorhabditis elegans] 1.0E-106
blast CAE65908 Hypothetical protein CBG11075 [Caenorhabditis briggsae] 1.0E-77
blast CAE65908 Hypothetical protein CBG11075 [Caenorhabditis briggsae] 4.0E-57
Sequence
Target Sequence 
>C. ELEGANS:178930_AT
gaaactctacaaccgatctgcaagatgtttcatttgaatgtgacgatttgaagaaaaact
gccttgccgtaaagaagtacaacggtcattgctactttttcgagaaaaattgtgaatatg
atgcggctatttcgaaaaggggaaaatcaaagacctcacgaaacccaaaaaccgctggcg
aatgcttgaaactgcagaaaaaatgtagtcaaaagtacaagaaacattatgcttgcaaga
ctttcagaagacactgtagaaaatataacttgccagaaattgaagtcaataattcaacat
tgacgagtaattcaacccatgttcaagtgagcccattggagcagtgtctaaacttccaaa
aaatctgcgccgccaagtacaaaaagcactttgcgtgtcgtcaataccgcaagaaatgcc
tgtcctacaaccttcccgaaattcatatggaaaagtcagaagtcacacaaaagccaccaa
accaacacaagaagcacatgaagaagggacatggaatgagaaaagagcacaatcacaatg
tgaatgagactgtggtgctgtcaacagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCTACAACCGATCTGCAAGA 307 357 302 Antisense
CAACGGTCATTGCTACTTTTTCGAG 561 185 381 Antisense
ACCGCTGGCGAATGCTTGAAACTGC 372 87 472 Antisense
CAACCCATGTTCAAGTGAGCCCATT 407 187 614 Antisense
GAGCCCATTGGAGCAGTGTCTAAAC 555 385 630 Antisense
TTCCAAAAAATCTGCGCCGCCAAGT 688 699 655 Antisense
GCACTTTGCGTGTCGTCAATACCGC 571 315 687 Antisense
CAAGAAATGCCTGTCCTACAACCTT 622 183 711 Antisense
TCCTACAACCTTCCCGAAATTCATA 662 589 724 Antisense
GAAGTCACACAAAAGCCACCAAACC 624 335 760 Antisense
GAGACTGTGGTGCTGTCAACAGACG 233 393 847 Antisense
Sequence Source Affymetrix Proprietary Database