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[178929_at]

Description F47G9.3 /REP_DB=WormBase Gene ID /WP=CE05885 /TR=Q20550 /GB=CAA98523.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 91      4grp_total > 41      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 34.3
(-3)
A 		85.6
(1.9)
P 		96.1
(2.9)
P 		97.4
(3)
A 		63
B 9.1
(-3)
A 		190.7
(2)
P 		225.1
(3)
P 		64.5
(-1.5)
P 		216
C 73.5
(-3)
A 		223.3
(3)
P 		129.6
(-0.8)
P 		105.2
(-1.7)
P 		150
avr 39
(-3) 		166.5
(3) 		150.3
(2.2) 		89
(-0.6) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 114.2
(-1.8)
P 		92
(-2.6)
P 		103.8
(-2.2)
P 		242.5
(3)
P 		213.4
(1.9)
P 		82.3
(-3)
P 		160
B 81.7
(-3)
P 		110.2
(-1.4)
P 		85.6
(-2.8)
A 		166
(1.8)
P 		187.3
(3)
P 		102.4
(-1.8)
P 		106
C 86.8
(-3)
P 		179.2
(3)
P 		107.3
(-1.7)
P 		176.2
(2.8)
P 		148.8
(1)
P 		125.8
(-0.5)
P 		92
avr 94.2
(-3) 		127.1
(-1) 		98.9
(-2.7) 		194.9
(3) 		183.2
(2.3) 		103.5
(-2.4) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 12.5
(-3)
A 		18.6
(-0.1)
P 		25.1
(3)
P 		14.3
(-2.1)
A 		13
B 2.9
(-3)
A 		47.1
(2.4)
P 		52.2
(3)
P 		13.8
(-1.7)
P 		49
C 24.3
(-2.1)
A 		64.2
(3)
P 		45.2
(0.5)
P 		17.7
(-3)
P 		47
avr 13.2
(-3) 		43.3
(3) 		40.8
(2.5) 		15.3
(-2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 21.1
(-2.9)
P 		32.7
(-1.3)
P 		22.6
(-2.6)
P 		61.5
(2.6)
P 		64.4
(3)
P 		20
(-3)
P 		44
B 28.4
(-2.2)
P 		36.7
(-1.3)
P 		20.8
(-3)
A 		44
(-0.5)
P 		76.1
(3)
P 		38.2
(-1.1)
P 		55
C 32.2
(-1.9)
P 		54.7
(3)
P 		27.3
(-3)
P 		35.4
(-1.2)
P 		48.2
(1.6)
P 		42.1
(0.2)
P 		27
avr 27.2
(-2.5) 		41.4
(-0.3) 		23.6
(-3) 		47
(0.6) 		62.9
(3) 		33.4
(-1.5) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13935
Sequence Type Exemplar sequence
Representative Public ID F47G9.3 NCBI
Target Description F47G9.3 /REP_DB=WormBase Gene ID /WP=CE05885 /TR=Q20550 /GB=CAA98523.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073474 NCBI Caenorhabditis elegans F47G9.3 (F47G9.3) mRNA, complete cds. 11/11 None
F47G9.3 ENSEMBL cdna:known chromosome:CEL140:V:11316045:11319468:-1 gene:F47G9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015853 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11316044-11319468(-) 98.87 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G9.3
Entrez Gene 179565 Entrez gene
SwissProt Q20550 EMBL-EBI
WormBase CE05885 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98523 Hypothetical protein F47G9.3 [Caenorhabditis elegans] emb|CAA98485.1| Hypothetical protein F47G9.3 [Caenorhabditis elegans] ref|NP_505875.1| F47G9.3 [Caenorhabditis elegans] 0.0
blast CAE75220 Hypothetical protein CBG23169 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 9.2E-44
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 3.2E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505875.1 1 795-817
F47G9.3 1 795-817
Sequence
Target Sequence 
>C. ELEGANS:178929_AT
gtcttgatcttgttttcacagtcgataattcaacgtcagctcgtcacgtttttgtgaaga
aatgcacggcttacgatcaaaatggcgatgagaaaataattttgattaaaaatggatgtg
ctacccaacatgcgaaggaatacgttttacgagatgagattaaggagaccgctacaggat
tcgtattaccgttccgagcgtttcggtttaaacagggagaggctgtcaagattgaatgtg
aggtgaagtactgtgaaaagtgtaaaaaggtgagattttttgttaatattaaaaattatt
ttggtaatataatcttcaacaatttgttggacaacgcaactatcaatattgcaaattgtc
catcacgtaaccgccgatttacaacttttgatgagagtgaggacacaacgttaactggaa
atgaagatactgaaaaagtccatgccgagcttctcgttcaaacaattgtagactcaaccc
aattagatggttattgccttcaattgaaccgttggattgcactaatttccttaactgtaa
ttataatttcaattcaattcctactcgtgatctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTGATCTTGTTTTCACAGTCGA 94 469 1883 Antisense
ACAGTCGATAATTCAACGTCAGCTC 607 107 1900 Antisense
ACGTCAGCTCGTCACGTTTTTGTGA 398 93 1915 Antisense
ATGGATGTGCTACCCAACATGCGAA 415 51 1994 Antisense
TAAGGAGACCGCTACAGGATTCGTA 492 637 2043 Antisense
CAGGATTCGTATTACCGTTCCGAGC 76 207 2057 Antisense
TGCAAATTGTCCATCACGTAACCGC 358 571 2232 Antisense
TAACCGCCGATTTACAACTTTTGAT 20 637 2250 Antisense
TCCATGCCGAGCTTCTCGTTCAAAC 172 591 2321 Antisense
GATTGCACTAATTTCCTTAACTGTA 384 433 2397 Antisense
AATTCAATTCCTACTCGTGATCTAT 59 177 2433 Antisense
Sequence Source Affymetrix Proprietary Database