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[178928_s_at]

Description F39B2.8 /REP_DB=WormBase Gene ID /WP=CE16013 /TR=O45500 /GB=CAB07388.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 41      6grp_total > 13      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 889.6
(3)
P 		782.9
(1.2)
P 		529.5
(-3)
P 		714.6
(0.1)
P 		360
B 903
(3)
P 		654.3
(-1)
P 		525.5
(-3)
P 		713.8
(-0)
P 		378
C 1032.8
(3)
P 		678.2
(-1.3)
P 		535.8
(-3)
P 		674.5
(-1.3)
P 		497
avr 941.8
(3) 		705.1
(-0.5) 		530.3
(-3) 		701
(-0.5) 		412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 1099.3
(3)
P 		904.4
(1.3)
P 		677.2
(-0.7)
P 		599.2
(-1.3)
P 		611.6
(-1.2)
P 		405.6
(-3)
P 		694
B 860.7
(3)
P 		824.7
(2.5)
P 		775.8
(1.8)
P 		652.4
(0.1)
P 		562.8
(-1.2)
P 		435.7
(-3)
P 		425
C 760.2
(1.8)
P 		839.1
(3)
P 		768.3
(2)
P 		580.8
(-0.8)
P 		600.3
(-0.5)
P 		433.1
(-3)
P 		406
avr 906.7
(3) 		856.1
(2.4) 		740.4
(0.9) 		610.8
(-0.7) 		591.6
(-0.9) 		424.8
(-3) 		482
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 323.9
(3)
P 		169.9
(-1.2)
P 		138.4
(-2.1)
P 		104.6
(-3)
P 		219
B 288
(3)
P 		161.6
(-1.6)
P 		121.8
(-3)
P 		152.1
(-1.9)
P 		166
C 341.9
(3)
P 		195
(-0.9)
P 		186.8
(-1.1)
P 		113.7
(-3)
P 		228
avr 317.9
(3) 		175.5
(-1.4) 		149
(-2.2) 		123.5
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 202.7
(-0.2)
P 		321.6
(3)
P 		147.5
(-1.7)
P 		152
(-1.6)
P 		184.6
(-0.7)
P 		98.7
(-3)
P 		223
B 299.5
(3)
P 		274.5
(1.9)
P 		188.4
(-1.9)
P 		172.8
(-2.5)
P 		228.6
(-0.1)
P 		162.5
(-3)
P 		137
C 281.8
(3)
P 		256
(2.1)
P 		195.5
(-0.1)
P 		116.8
(-3)
P 		194.3
(-0.2)
P 		145
(-2)
P 		165
avr 261.3
(2.1) 		284
(3) 		177.1
(-1.3) 		147.2
(-2.5) 		202.5
(-0.3) 		135.4
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178928_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1479
Sequence Type Exemplar sequence
Representative Public ID F39B2.8 NCBI
Target Description F39B2.8 /REP_DB=WormBase Gene ID /WP=CE16013 /TR=O45500 /GB=CAB07388.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061171 NCBI Caenorhabditis elegans F39B2.8 (F39B2.8) mRNA, complete cds. 11/11 None
SNAP00000018500 ENSEMBL cdna:SNAP chromosome:CEL140:I:14768839:14773030:-1 11/11 None
GENEFINDER00000018515 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14768839:14777044:-1 11/11 None
F39B2.8 ENSEMBL cdna:known chromosome:CEL140:I:14768768:14777098:-1 gene:F39B2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14768769-14776975(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39B2.8
Entrez Gene 3565054 Entrez gene
SwissProt O45500 EMBL-EBI
WormBase CE30529 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635488_AT dm
DROSGENOME1:145787_AT dm
DROSGENOME1:145786_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8067 metabotropic glutamate, GABA-B-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07388 Hypothetical protein F39B2.8 [Caenorhabditis elegans] ref|NP_493572.2| F39B2.8 [Caenorhabditis elegans] 0.0
blast CAE72576 Hypothetical protein CBG19763 [Caenorhabditis briggsae] 0.0
blast AAX52647 CG31660-PC, isoform C [Drosophila melanogaster] ref|NP_001014465.1| CG31660-PC, isoform C [Drosophila melanogaster] 1.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493572.2 7 212-234,246-268,278-297,318-340,355-377,390-412,427-449
F39B2.8 7 212-234,246-268,278-297,318-340,355-377,390-412,427-449
SNAP00000018500 5 43-65,86-108,123-145,158-180,195-217
GENEFINDER00000018515 7 212-234,246-268,278-297,318-340,355-377,390-412,427-449
Sequence
Target Sequence 
>C. ELEGANS:178928_S_AT
ggcagttcactgtagctgtgtgcttggaagctgttatcacattaatggccaacttgatta
ggtattctattcgaaattcgggacgagctgacaccctcttcatcgtctcatttgtccatc
tacagcttacagtttcggtgaacattgttatcattgtggcacctaaattctatttgtcaa
atggagagccaagtcgtcgatcgatgacacttggcggccactcgggacgtgctcatcctt
cgctggctaaactacgtgacaacatactaaacggaactatcgactttgcggaagttccga
tcgctgacatgaaccccgaagacattcgggcagagttgaagcgcgtctacacgcaattac
gcatgtacaagttgaaaaatttgtatcaagacaacccgcacatttctaaaaaacggggtg
ggaagaaatggagcgataaaaacaccaaagcaacacgacggatctcaataccatcatgct
caccgcagacgaaacggatagaggaagacgagaaaagtgacctgactgtggagtcatcac
ctcataac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGTTCACTGTAGCTGTGTGCTT 170 537 698 Antisense
AAATTCGGGACGAGCTGACACCCTC 287 69 771 Antisense
GTCCATCTACAGCTTACAGTTTCGG 222 477 811 Antisense
ATGGAGAGCCAAGTCGTCGATCGAT 54 53 878 Antisense
TCATCCTTCGCTGGCTAAACTACGT 357 621 930 Antisense
AGTTCCGATCGCTGACATGAACCCC 707 63 990 Antisense
GAAGCGCGTCTACACGCAATTACGC 90 341 1035 Antisense
ATCAAGACAACCCGCACATTTCTAA 236 27 1082 Antisense
ACACCAAAGCAACACGACGGATCTC 570 107 1139 Antisense
GACGGATCTCAATACCATCATGCTC 338 377 1154 Antisense
GACTGTGGAGTCATCACCTCATAAC 422 375 1221 Antisense
Sequence Source Affymetrix Proprietary Database