[Home] | [Total List]

[178927_at]

Description K08D8.5 /REP_DB=WormBase Gene ID /WP=CE06144 /TR=Q21327 /GB=CAA97432.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      6grp_highest_nonorm > 90      6grp_total > 70      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 321.6
(3)
P 		197.4
(0.6)
P 		274.8
(2.1)
P 		9.5
(-3)
A 		312
B 319.8
(2.8)
P 		244.2
(1.3)
P 		329.2
(3)
P 		22.2
(-3)
A 		307
C 247.8
(1.9)
P 		218.5
(1.2)
P 		293.3
(3)
P 		48.3
(-3)
A 		245
avr 296.4
(2.9) 		220
(1.3) 		299.1
(3) 		26.7
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 105.7
(-2.8)
P 		97.9
(-3)
P 		211.3
(0.1)
P 		320.3
(3)
P 		125
(-2.3)
P 		120.6
(-2.4)
P 		222
B 110.2
(-2.6)
P 		99.7
(-3)
P 		136.5
(-1.4)
P 		241.1
(3)
P 		118
(-2.2)
P 		147.2
(-1)
P 		141
C 88.7
(-3)
P 		108.6
(-2.2)
P 		192.3
(1.1)
P 		238.5
(3)
P 		132.3
(-1.3)
P 		144.3
(-0.8)
P 		150
avr 101.5
(-3) 		102.1
(-3) 		180
(-0.1) 		266.6
(3) 		125.1
(-2.1) 		137.4
(-1.7) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 117.1
(3)
P 		42.8
(-0.9)
P 		71.8
(0.7)
P 		1.4
(-3)
A 		116
B 102
(3)
P 		60.3
(0.4)
P 		76.3
(1.4)
P 		4.7
(-3)
A 		97
C 82
(1.7)
P 		62.8
(0.5)
P 		102.2
(3)
P 		8.2
(-3)
A 		94
avr 100.4
(3) 		55.3
(0.2) 		83.4
(1.9) 		4.8
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 19.5
(-3)
P 		34.8
(-1.5)
P 		46
(-0.4)
P 		81.2
(3)
P 		37.7
(-1.2)
P 		29.4
(-2)
P 		62
B 38.4
(-2)
P 		33.2
(-3)
P 		33.2
(-3)
P 		63.9
(3)
P 		47.9
(-0.1)
P 		54.9
(1.2)
P 		31
C 32.9
(-3)
P 		33.1
(-2.9)
P 		48.9
(3)
P 		48
(2.7)
P 		42.8
(0.7)
P 		48.3
(2.8)
P 		16
avr 30.3
(-3) 		33.7
(-2.4) 		42.7
(-0.8) 		64.4
(3) 		42.8
(-0.8) 		44.2
(-0.6) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9569
Sequence Type Exemplar sequence
Representative Public ID K08D8.5 NCBI
Target Description K08D8.5 /REP_DB=WormBase Gene ID /WP=CE06144 /TR=Q21327 /GB=CAA97432.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070061 NCBI Caenorhabditis elegans K08D8.5 (K08D8.5) mRNA, complete cds. 11/11 A 
SNAP00000040293 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12910660:12912052:-1 11/11 None
GENEFINDER00000040298 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12904234:12912079:-1 11/11 None
K08D8.5 ENSEMBL cdna:known chromosome:CEL140:IV:12910617:12912106:-1 gene:K08D8.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12910665-12912085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D8.5
Entrez Gene 178243 Entrez gene
SwissProt Q21327 EMBL-EBI
WormBase CE06144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97432 Hypothetical protein K08D8.5 [Caenorhabditis elegans] ref|NP_502462.1| K08D8.5 [Caenorhabditis elegans] 0.0
blast CAA97435 Hypothetical protein K08D8.4a [Caenorhabditis elegans] ref|NP_001023284.1| K08D8.4a [Caenorhabditis elegans] 0.0
blast CAI59116 Hypothetical protein K08D8.4d [Caenorhabditis elegans] ref|NP_001023287.1| K08D8.4d [Caenorhabditis elegans] 0.0
blast CAA97434 Hypothetical protein K08D8.3 [Caenorhabditis elegans] ref|NP_502460.1| K08D8.3 [Caenorhabditis elegans] 0.0
blast CAA97437 Hypothetical protein C32H11.1 [Caenorhabditis elegans] emb|CAB05142.1| Hypothetical protein C32H11.1 [Caenorhabditis elegans] ref|NP_502463.1| C32H11.1 [Caenorhabditis elegans] 1.0E-145
blast CAI59115 Hypothetical protein K08D8.4c [Caenorhabditis elegans] ref|NP_001023286.1| K08D8.4c [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-47
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-47
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.9E-47
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.4E-38
Sequence
Target Sequence 
>C. ELEGANS:178927_AT
tatcctccgggaagtcgaatgaacatgcaattggacggaattcactctttggcaggtgtt
gcatcttctttctacaccacatacactgcaatcaatcgagtgatgctcgtcggcttctca
attccagatttcgattctgcggttctccggcaatcagctatttacgatggtgattccgtg
aatgcgaagtaccttggcaatttaatcgatacacttcacggacagattgtctcaactggc
aacaagcttacgatctatacttttggattggagaatcatatcaataatactcttttcatg
ggattggatactgcggctgctggggatattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCTCCGGGAAGTCGAATGAACA 606 657 439 Antisense
TGGACGGAATTCACTCTTTGGCAGG 228 547 470 Antisense
CTCTTTGGCAGGTGTTGCATCTTCT 518 227 483 Antisense
TTCTACACCACATACACTGCAATCA 697 689 508 Antisense
TCGGCTTCTCAATTCCAGATTTCGA 569 607 548 Antisense
CAGATTTCGATTCTGCGGTTCTCCG 50 207 563 Antisense
GATTCCGTGAATGCGAAGTACCTTG 122 433 610 Antisense
TTAATCGATACACTTCACGGACAGA 564 683 640 Antisense
CACGGACAGATTGTCTCAACTGGCA 619 197 655 Antisense
CATGGGATTGGATACTGCGGCTGCT 527 209 735 Antisense
TACTGCGGCTGCTGGGGATATTCAA 214 647 747 Antisense
Sequence Source Affymetrix Proprietary Database