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[178924_at]

Description C17H1.6 /REP_DB=WormBase Gene ID /WP=CE15628 /TR=O45257 /GB=CAB07170.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 2.1
(-3)
A 		1.8
(-3)
A 		9.1
(-1.8)
A 		39.7
(3)
A 		38
B 1.7
(-3)
A 		3.5
(-2.6)
A 		26.9
(2.5)
A 		29.2
(3)
A 		28
C 2.5
(-2.9)
A 		24.6
(0.7)
A 		1.6
(-3)
A 		38.5
(3)
A 		37
avr 2.1
(-3) 		10
(-1.6) 		12.5
(-1.1) 		35.8
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.8
(-2.3)
A 		30.3
(2.2)
A 		34.5
(3)
A 		32.8
(2.7)
A 		15
(-0.6)
A 		2.3
(-3)
A 		32
B 50.5
(3)
A 		30.1
(-0.3)
A 		30.6
(-0.3)
P 		28.1
(-0.7)
A 		22.9
(-1.5)
A 		13.8
(-3)
A 		37
C 17.9
(-0.8)
A 		40.8
(3)
A 		4.5
(-3)
A 		27.7
(0.8)
A 		13
(-1.6)
A 		14.8
(-1.3)
P 		36
avr 24.7
(0.7) 		33.7
(3) 		23.2
(0.3) 		29.5
(1.9) 		17
(-1.3) 		10.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.8
(-2.6)
A 		0.4
(-3)
A 		2.4
(-0.8)
A 		5.8
(3)
A 		5
B 0.5
(-3)
A 		0.9
(-2.6)
A 		6.2
(3)
A 		6.2
(3)
A 		6
C 0.8
(-2.8)
A 		7.1
(3)
A 		0.6
(-3)
A 		6.5
(2.4)
A 		7
avr 0.7
(-3) 		2.8
(-0.7) 		3.1
(-0.4) 		6.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		10.8
(3)
A 		7.5
(1.1)
A 		8.3
(1.5)
A 		4.5
(-0.7)
A 		0.6
(-3)
A 		10
B 17.6
(3)
A 		10
(-0.6)
A 		7.4
(-1.9)
P 		7.5
(-1.8)
A 		9.3
(-1)
A 		5.1
(-3)
A 		13
C 6.6
(-0.1)
A 		12.5
(3)
A 		1.1
(-3)
A 		5.6
(-0.6)
A 		4.2
(-1.4)
A 		4.9
(-1)
P 		11
avr 8.4
(0.9) 		11.1
(3) 		5.3
(-1.6) 		7.1
(-0.2) 		6
(-1) 		3.5
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1031
Sequence Type Exemplar sequence
Representative Public ID C17H1.6 NCBI
Target Description C17H1.6 /REP_DB=WormBase Gene ID /WP=CE15628 /TR=O45257 /GB=CAB07170.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060899 NCBI Caenorhabditis elegans C17H1.6 (C17H1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005628 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13136590:13140532:-1 11/11 None
SNAP00000005618 ENSEMBL cdna:SNAP chromosome:CEL140:I:13139063:13140532:-1 11/11 None
C17H1.6 ENSEMBL cdna:known chromosome:CEL140:I:13139063:13140532:-1 gene:C17H1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13138993-13140463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.6
Entrez Gene 182748 Entrez gene
SwissProt O45257 EMBL-EBI
WormBase CE15628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07170 Hypothetical protein C17H1.6 [Caenorhabditis elegans] ref|NP_493300.1| C17H1.6 [Caenorhabditis elegans] 1.0E-170
blast CAB07170 Hypothetical protein C17H1.6 [Caenorhabditis elegans] ref|NP_493300.1| C17H1.6 [Caenorhabditis elegans] 1.0E-159
blast CAB07172 Hypothetical protein C17H1.8 [Caenorhabditis elegans] ref|NP_493299.1| C17H1.8 [Caenorhabditis elegans] 1.0E-123
blast CAB07168 Hypothetical protein C17H1.4 [Caenorhabditis elegans] ref|NP_493296.1| C17H1.4 [Caenorhabditis elegans] 1.0E-92
blast CAB07171 Hypothetical protein C17H1.7 [Caenorhabditis elegans] ref|NP_493301.1| C17H1.7 [Caenorhabditis elegans] 1.0E-77
blast CAB07165 Hypothetical protein C17H1.1 [Caenorhabditis elegans] ref|NP_493298.1| C17H1.1 [Caenorhabditis elegans] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:178924_AT
gaattacgaatgcatgcgctagaacaatggactccggaaacaaaggtgtacgtcggcaat
gaactgaagaaggacagaaaagaagctgttttcattgttgctgtcaagagaatagtaagc
gctggacaagatcttacagacgaagtcgactctttggcggatcacacatttgaactaaca
accggatgtaaacgatcggcattggaaagcgatattggactatgtgagcatattgtttcc
atgatcatcagcaaaatagcagaactacaagataggtgcctggagatatcaattttctgt
accacagatcacaccatggttaaaccagtgcagaaaaacgctgaagagattggaaagtct
gcacgggagattctaatgcatttagaacgatttcaagtttcgttgtcggacgatccgaat
accaattcgataaaactttttgaaagcgttcaaaccaaaaatgacagactgaagagaatg
attaaattgatcccagatgtcactgaaaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTACGAATGCATGCGCTAGAAC 675 323 364 Antisense
TGCGCTAGAACAATGGACTCCGGAA 416 583 378 Antisense
AACAAAGGTGTACGTCGGCAATGAA 390 135 402 Antisense
GGCGGATCACACATTTGAACTAACA 336 541 519 Antisense
CAACCGGATGTAAACGATCGGCATT 253 187 542 Antisense
GAGCATATTGTTTCCATGATCATCA 340 389 589 Antisense
GGAGATATCAATTTTCTGTACCACA 98 519 645 Antisense
CTGTACCACAGATCACACCATGGTT 54 239 660 Antisense
GGAAAGTCTGCACGGGAGATTCTAA 303 527 715 Antisense
GTTTCGTTGTCGGACGATCCGAATA 318 449 760 Antisense
TGATCCCAGATGTCACTGAAACCAA 633 565 851 Antisense
Sequence Source Affymetrix Proprietary Database