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[178923_at]

Description C01H6.3 /REP_DB=WormBase Gene ID /WP=CE05186 /TR=Q17580 /GB=CAA95778.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 05      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 73.9
(-1.5)
P 		47.7
(-3)
A 		73.2
(-1.5)
A 		149.8
(3)
A 		102
B 117.6
(1.8)
M 		70.7
(-3)
A 		81.8
(-1.9)
A 		129.3
(3)
M 		59
C 92.6
(-1)
A 		56.2
(-3)
A 		64.8
(-2.5)
A 		163.9
(3)
P 		108
avr 94.7
(-0.6) 		58.2
(-3) 		73.3
(-2) 		147.7
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 87.8
(-1.8)
P 		126.7
(-0.2)
P 		208.5
(3)
M 		78.5
(-2.2)
A 		80
(-2.1)
A 		57.3
(-3)
P 		151
B 52.8
(-2.8)
A 		151.1
(3)
P 		110.5
(0.6)
P 		113.4
(0.8)
P 		70.5
(-1.8)
A 		49.4
(-3)
A 		102
C 92.4
(0.1)
M 		144.5
(3)
P 		117.1
(1.5)
A 		93.6
(0.2)
P 		35.1
(-3)
A 		76.5
(-0.7)
A 		109
avr 77.7
(-1.8) 		140.8
(2.7) 		145.4
(3) 		95.2
(-0.6) 		61.9
(-2.9) 		61.1
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 26.9
(3)
P 		10.3
(-3)
A 		19.1
(0.2)
A 		21.9
(1.2)
A 		17
B 37.5
(3)
M 		17.5
(-3)
A 		19
(-2.6)
A 		27.6
(0)
M 		20
C 30.7
(3)
A 		16.2
(-3)
A 		22.6
(-0.4)
A 		27.6
(1.7)
P 		15
avr 31.7
(3) 		14.7
(-3) 		20.2
(-1.1) 		25.7
(0.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.2
(-2.6)
P 		45.1
(2.9)
P 		45.4
(3)
M 		19.9
(-1.9)
A 		24.1
(-1.1)
A 		14
(-3)
P 		31
B 18.4
(-3)
A 		50.3
(3)
P 		26.8
(-1.4)
P 		30
(-0.8)
P 		28.7
(-1.1)
A 		18.4
(-3)
A 		32
C 34.3
(1.2)
M 		44.1
(3)
P 		29.8
(0.4)
A 		18.8
(-1.6)
P 		11.4
(-3)
A 		25.6
(-0.4)
A 		33
avr 23
(-2.2) 		46.5
(3) 		34
(0.2) 		22.9
(-2.2) 		21.4
(-2.5) 		19.3
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.728
Sequence Type Exemplar sequence
Representative Public ID C01H6.3 NCBI
Target Description C01H6.3 /REP_DB=WormBase Gene ID /WP=CE05186 /TR=Q17580 /GB=CAA95778.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059636 NCBI Caenorhabditis elegans C01H6.3 (C01H6.3) mRNA, complete cds. 11/11 None
C01H6.3 ENSEMBL cdna:known chromosome:CEL140:I:7216420:7217817:-1 gene:C01H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008129 8/11 Cross Hyb Matching Probes None
SNAP00000008117 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7216350-7217748(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01H6.3
Entrez Gene 182091 Entrez gene
SwissProt Q17580 EMBL-EBI
WormBase CE05186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95778 Hypothetical protein C01H6.3 [Caenorhabditis elegans] ref|NP_492037.1| C01H6.3 [Caenorhabditis elegans] 1.0E-101
blast CAE74247 Hypothetical protein CBG21933 [Caenorhabditis briggsae] 2.0E-86
Sequence
Target Sequence 
>C. ELEGANS:178923_AT
gcctacattcctagaatgcccacactgtcaacgtctatattcaaaacattcgttgcttat
tcatgagaagaattgtattgagtcaatgcacaaaatcttagagcaagaaaagcttaaaat
gcagaataatcaaaaaagaggtagatcaaagtctggtagacgaaaaaaaattcgacccgc
ggaaatgacaactacggagagacctcgaacacgatcattatcaagatataatcatgaaaa
taacggacttcgaatttgttttgtttgcggagagcaatacgacgaccaagtcatcgaaga
gcacaaggaaaagtgttatggagattggtcaatattgtcaaaatctctatccgtacgatt
tcacattcatcaaccaaaaaccctaaatactccaagtatagatggaacaattgatgttgc
tcgagaaaatatgagagctgttcagagttcacataactgccaaattgttagatgccggtt
ttgtaatgctcgaatttctttgcaacacgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTACATTCCTAGAATGCCCACAC 197 283 15 Antisense
CCCACACTGTCAACGTCTATATTCA 580 257 33 Antisense
TCGACCCGCGGAAATGACAACTACG 108 599 186 Antisense
GGAGAGACCTCGAACACGATCATTA 440 519 210 Antisense
GACTTCGAATTTGTTTTGTTTGCGG 316 371 260 Antisense
GCGGAGAGCAATACGACGACCAAGT 433 293 281 Antisense
ATTGTCAAAATCTCTATCCGTACGA 211 3 348 Antisense
ATCCGTACGATTTCACATTCATCAA 419 39 363 Antisense
ACTGCCAAATTGTTAGATGCCGGTT 325 99 470 Antisense
ATGCCGGTTTTGTAATGCTCGAATT 30 41 486 Antisense
GCTCGAATTTCTTTGCAACACGCAC 478 299 502 Antisense
Sequence Source Affymetrix Proprietary Database