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[178920_at]

Description F31B9.2 /REP_DB=WormBase Gene ID /WP=CE17728 /TR=O62187 /GB=CAB04221.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 3.6
(-3)
A 		8.7
(-2.4)
A 		21.5
(-0.9)
A 		54.7
(3)
A 		51
B 13
(-3)
A 		28.3
(-0.6)
A 		15.4
(-2.6)
A 		52
(3)
A 		39
C 34.1
(-0.6)
A 		4.1
(-2.9)
A 		2.5
(-3)
A 		82.6
(3)
A 		80
avr 16.9
(-2.5) 		13.7
(-2.9) 		13.1
(-3) 		63.1
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 45.2
(3)
A 		5.5
(-3)
A 		38.1
(1.9)
P 		17.6
(-1.2)
A 		27.7
(0.4)
A 		9.7
(-2.4)
A 		40
B 13.9
(0.7)
A 		2
(-2.7)
A 		21.7
(3)
A 		1
(-3)
A 		15.7
(1.3)
A 		14.9
(1)
A 		21
C 11.1
(-0.5)
A 		23.8
(3)
A 		2
(-3)
A 		2.9
(-2.8)
A 		22.9
(2.8)
A 		14.5
(0.4)
A 		22
avr 23.4
(3) 		10.4
(-1.8) 		20.6
(2) 		7.2
(-3) 		22.1
(2.5) 		13
(-0.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-3)
A 		1.9
(-2.5)
A 		5.6
(0.9)
A 		8
(3)
A 		7
B 4.1
(-2.6)
A 		7
(-0.3)
A 		3.6
(-3)
A 		11.1
(3)
A 		8
C 11.3
(1.8)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		13.9
(3)
A 		13
avr 5.6
(-1.3) 		3.4
(-3) 		3.4
(-3) 		11
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.3
(3)
A 		2
(-3)
A 		8.3
(3)
P 		4.5
(-0.6)
A 		8.3
(3)
A 		2.4
(-2.6)
A 		6
B 4.8
(1.4)
A 		0.7
(-2.6)
A 		5.3
(1.9)
A 		0.3
(-3)
A 		6.4
(3)
A 		5.6
(2.2)
A 		6
C 4.1
(0.1)
A 		7.3
(2.9)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		7.4
(3)
A 		4.9
(0.8)
A 		7
avr 5.7
(1.2) 		3.3
(-1.4) 		4.7
(0.1) 		1.8
(-3) 		7.4
(3) 		4.3
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17493
Sequence Type Exemplar sequence
Representative Public ID F31B9.2 NCBI
Target Description F31B9.2 /REP_DB=WormBase Gene ID /WP=CE17728 /TR=O62187 /GB=CAB04221.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078212 NCBI Caenorhabditis elegans F31B9.2 (F31B9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000004210 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15918053:15920339:1 11/11 None
F31B9.2 ENSEMBL cdna:known chromosome:CEL140:X:15918053:15920339:1 gene:F31B9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004207 1/11 Cross Hyb Matching Probes None
SNAP00000004208 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15918052-15920339(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31B9.2
Entrez Gene 185142 Entrez gene
SwissProt O62187 EMBL-EBI
WormBase CE17728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04221 Hypothetical protein F31B9.2 [Caenorhabditis elegans] ref|NP_510613.1| F31B9.2 [Caenorhabditis elegans] 1.0E-155
blast CAB04221 Hypothetical protein F31B9.2 [Caenorhabditis elegans] ref|NP_510613.1| F31B9.2 [Caenorhabditis elegans] 1.0E-152
blast CAE69723 Hypothetical protein CBG15994 [Caenorhabditis briggsae] 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178920_AT
gttgcaacccaacagatcatttatggtatccaaacggaacagaattaacggttttcgctt
ttcaactagaactcaacagtcgtgatgagagtgaaaattcaatcgtgattcatagcctat
accaatcgatcaaactgatatttccttctattcccacaaaattaacatattcattgatgg
tttgctcacatttcctccttttcctttctcaggcaccccccataaaacagcaccacacga
cggtcgcagaatacagtgagatttggccaaaaatggagggtcgaatttatacgcaagctg
gaacggtttcaacaatgtctgatgaagaacgccagaagcttctgaaagaaatcgaaatgt
ttcagatgatcaagaaaaagcgagaagcgatggaaaaagaaaacgaaatgctcagcagaa
gatgcgaggagttaacaatgagtatcaagtgccaaaagcatcaacgccaagaactgatga
aagagcgtatcgagctgggacctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCAACCCAACAGATCATTTATG 278 437 221 Antisense
TCGCTTTTCAACTAGAACTCAACAG 193 599 275 Antisense
TTCATAGCCTATACCAATCGATCAA 172 687 329 Antisense
AAACTGATATTTCCTTCTATTCCCA 261 127 352 Antisense
ATTGATGGTTTGCTCACATTTCCTC 251 5 393 Antisense
ATAAAACAGCACCACACGACGGTCG 31 3 442 Antisense
ACGACGGTCGCAGAATACAGTGAGA 675 91 457 Antisense
AGGGTCGAATTTATACGCAAGCTGG 535 1 497 Antisense
TACGCAAGCTGGAACGGTTTCAACA 213 647 510 Antisense
GTGCCAAAAGCATCAACGCCAAGAA 707 477 669 Antisense
AAGAGCGTATCGAGCTGGGACCTGA 526 151 701 Antisense
Sequence Source Affymetrix Proprietary Database