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[178919_at]

Description C55A1.3 /REP_DB=WormBase Gene ID /WP=CE15736 /TR=O17717 /GB=CAB04011.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 33      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 49.5
(-0.6)
A 		59.8
(3)
A 		42.4
(-3)
A 		47.6
(-1.2)
A 		17
B 19.7
(-3)
A 		42.9
(1.5)
P 		50.7
(3)
A 		20.4
(-2.9)
A 		31
C 8.2
(-3)
A 		38.3
(0.5)
A 		40.2
(0.7)
A 		59.7
(3)
A 		52
avr 25.8
(-3) 		47
(3) 		44.4
(2.3) 		42.6
(1.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 18.8
(-2.1)
A 		11.7
(-3)
A 		28.3
(-1)
M 		61
(3)
P 		31.3
(-0.6)
A 		51.5
(1.8)
A 		49
B 46.2
(2.3)
M 		42
(1.7)
P 		29.3
(-0.1)
A 		45.5
(2.2)
A 		51.2
(3)
A 		8.2
(-3)
A 		43
C 42.3
(1)
P 		44.4
(1.5)
P 		51.4
(3)
P 		51.2
(3)
A 		24.2
(-3)
A 		26.9
(-2.4)
A 		27
avr 35.8
(-1.3) 		32.7
(-2) 		36.3
(-1.1) 		52.6
(3) 		35.6
(-1.3) 		28.9
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 18
(3)
A 		13
(0.3)
A 		11.1
(-0.8)
A 		7
(-3)
A 		11
B 6.3
(-1.4)
A 		10.6
(2.1)
P 		11.7
(3)
A 		4.4
(-3)
A 		7
C 2.7
(-3)
A 		11
(1.4)
A 		14
(3)
A 		10.1
(0.9)
A 		11
avr 9
(-0.9) 		11.5
(2.1) 		12.3
(3) 		7.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.5
(-3)
A 		4.2
(-2.7)
A 		6.2
(-1.7)
M 		15.5
(3)
P 		9.5
(0)
A 		12.5
(1.5)
A 		12
B 16.1
(1.4)
M 		14
(0.7)
P 		7.1
(-1.6)
A 		12
(0)
A 		20.8
(3)
A 		3.1
(-3)
A 		18
C 15.7
(3)
P 		13.6
(1.4)
P 		13.1
(1)
P 		10.3
(-1.1)
A 		7.8
(-3)
A 		9
(-2.1)
A 		8
avr 11.8
(1.8) 		10.6
(0.2) 		8.8
(-2.2) 		12.6
(2.9) 		12.7
(3) 		8.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13927
Sequence Type Exemplar sequence
Representative Public ID C55A1.3 NCBI
Target Description C55A1.3 /REP_DB=WormBase Gene ID /WP=CE15736 /TR=O17717 /GB=CAB04011.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074487(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074487 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-248) (str-248) mRNA, complete cds. 10/11 None
SNAP00000022794 ENSEMBL cdna:SNAP chromosome:CEL140:V:15630709:15631885:-1 10/11 None
GENEFINDER00000022805 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15630709:15634108:-1 10/11 None
C55A1.3 ENSEMBL cdna:known chromosome:CEL140:V:15630709:15632227:-1 gene:C55A1.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15630708-15632227(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-248
Ensembl C55A1.3
Entrez Gene 183824 Entrez gene
WormBase CE36810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04011 Hypothetical protein C55A1.3 [Caenorhabditis elegans] ref|NP_506888.2| Seven TM Receptor family member (str-248) [Caenorhabditis elegans] 0.0
blast AAC47934 Seven tm receptor protein 247 [Caenorhabditis elegans] ref|NP_504098.2| Seven TM Receptor family member (str-247) [Caenorhabditis elegans] 1.0E-140
blast CAB04011 Hypothetical protein C55A1.3 [Caenorhabditis elegans] ref|NP_506888.2| Seven TM Receptor family member (str-248) [Caenorhabditis elegans] 1.0E-130
blast CAB04011 Hypothetical protein C55A1.3 [Caenorhabditis elegans] ref|NP_506888.2| Seven TM Receptor family member (str-248) [Caenorhabditis elegans] 1.0E-119
blast CAE67624 Hypothetical protein CBG13176 [Caenorhabditis briggsae] 1.0E-106
blast AAC47934 Seven tm receptor protein 247 [Caenorhabditis elegans] ref|NP_504098.2| Seven TM Receptor family member (str-247) [Caenorhabditis elegans] 1.0E-96
blast AAC47934 Seven tm receptor protein 247 [Caenorhabditis elegans] ref|NP_504098.2| Seven TM Receptor family member (str-247) [Caenorhabditis elegans] 2.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.9E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.9E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.9E-8
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.0E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506888.2 6 13-30,104-126,147-169,217-239,260-282,287-309
C55A1.3 6 13-30,104-126,147-169,217-239,260-282,287-309
SNAP00000022794 4 31-53,103-125,146-168,173-195
GENEFINDER00000022805 7 30-52,80-102,117-134,147-169,220-242,263-285,290-312
Sequence
Target Sequence 
>C. ELEGANS:178919_AT
gccgaaatcgactacttgggcccatgctttcaagttcaggacgagaaaggagtttaccat
cttaattgggacgcggctggaccaattggaataatgactgtgcttattgaaaaatccatc
cagggtctaagcttcatcacagtattctactgtggctactctatctacagaaacatcaag
tccatggccgctatgagatcgtcggtcgaccattctctccaatctcaattattctatgct
ctagtctttcaaactctcatcccagtgatcctgatgcacattccagcaagtttgggattc
ctcttctccatgtttggccagtcaatattgttcttcggcgagctcccgactttttcagta
tttctgtacccaatcttggacccgctccccaattttttcattattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGAAATCGACTACTTGGGCCCAT 403 283 577 Antisense
GGCCCATGCTTTCAAGTTCAGGACG 320 539 595 Antisense
TCCATCCAGGGTCTAAGCTTCATCA 538 589 691 Antisense
AGTCCATGGCCGCTATGAGATCGTC 360 61 755 Antisense
TGAGATCGTCGGTCGACCATTCTCT 125 569 770 Antisense
GCTCTAGTCTTTCAAACTCTCATCC 475 299 814 Antisense
CTCTCATCCCAGTGATCCTGATGCA 385 231 830 Antisense
AGCAAGTTTGGGATTCCTCTTCTCC 549 75 861 Antisense
TCTTCTCCATGTTTGGCCAGTCAAT 549 617 878 Antisense
GTCAATATTGTTCTTCGGCGAGCTC 431 463 897 Antisense
CGCTCCCCAATTTTTTCATTATTCG 474 255 959 Antisense
Sequence Source Affymetrix Proprietary Database