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[178918_at]

Description T06D8.1 /REP_DB=WormBase Gene ID /WP=CE21154 /TR=Q22248 /GB=CAA88964.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 12      6grp_total > 24      4grp_total > 11      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 583
1 2 3 4 range
A 1934.6
(-0.6)
P 		1794.3
(-2.6)
P 		1769
(-3)
P 		2181.5
(3)
P 		413
B 1903.4
(-1.4)
P 		1933.9
(-1.1)
P 		1766.6
(-3)
P 		2294.3
(3)
P 		528
C 1732.3
(-2.7)
P 		1804.5
(-1.8)
P 		1711.1
(-3)
P 		2179.6
(3)
P 		469
avr 1856.8
(-1.6) 		1844.2
(-1.8) 		1748.9
(-3) 		2218.5
(3) 		470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1442
1 2 3 4 5 6 range
A 2371.1
(3)
P 		2374.7
(3)
P 		1565.7
(-2.9)
P 		1549.6
(-3)
P 		1575
(-2.8)
P 		1932.3
(-0.2)
P 		825
B 2194.5
(3)
P 		2194.9
(3)
P 		1814.9
(0.9)
P 		1841.2
(1)
P 		1132.1
(-3)
P 		1483
(-1)
P 		1063
C 2387.7
(2.7)
P 		2065.9
(1.4)
P 		2454.3
(3)
P 		1462.9
(-1.1)
P 		1664
(-0.3)
P 		1012.6
(-3)
P 		1442
avr 2317.8
(3) 		2211.8
(2.3) 		1945
(0.4) 		1617.9
(-1.9) 		1457
(-3) 		1476
(-2.9) 		861
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 704.4
(3)
P 		389.5
(-1.9)
P 		462.4
(-0.8)
P 		319.3
(-3)
P 		385
B 607
(3)
P 		477.6
(-0.9)
P 		409.4
(-3)
P 		488.9
(-0.6)
P 		198
C 573.4
(2.4)
P 		518.8
(1)
P 		596.4
(3)
P 		367.5
(-3)
P 		229
avr 628.3
(3) 		462
(-1.2) 		489.4
(-0.5) 		391.9
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 591
1 2 3 4 5 6 range
A 437.1
(-1.9)
P 		844.6
(3)
P 		341
(-3)
P 		393
(-2.4)
P 		475.3
(-1.4)
P 		470.5
(-1.5)
P 		504
B 763.6
(3)
P 		730.6
(2.4)
P 		440.7
(-3)
P 		487.7
(-2.1)
P 		460
(-2.6)
P 		553
(-0.9)
P 		323
C 885
(3)
P 		630.4
(0.4)
P 		624.7
(0.4)
P 		294.2
(-3)
P 		538.4
(-0.5)
P 		339
(-2.5)
P 		591
avr 695.2
(2.3) 		735.2
(3) 		468.8
(-1.7) 		391.6
(-3) 		491.2
(-1.3) 		454.2
(-1.9) 		344
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3713
Sequence Type Exemplar sequence
Representative Public ID T06D8.1 NCBI
Target Description T06D8.1 /REP_DB=WormBase Gene ID /WP=CE21154 /TR=Q22248 /GB=CAA88964.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063997(11), NM_182244(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063997 NCBI Caenorhabditis elegans T06D8.1a (T06D8.1) mRNA, complete cds. 11/11 None
NM_182244 NCBI Caenorhabditis elegans T06D8.1b (T06D8.1) mRNA, complete cds. 10/11 None
SNAP00000001106 ENSEMBL cdna:SNAP chromosome:CEL140:II:11212052:11220144:1 11/11 None
GENEFINDER00000001122 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11213620:11220144:1 11/11 None
T06D8.1a ENSEMBL cdna:known chromosome:CEL140:II:11213620:11220536:1 gene:T06D8.1 11/11 A 
T06D8.1b ENSEMBL cdna:known chromosome:CEL140:II:11213620:11220529:1 gene:T06D8.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11213616-11220141(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88964 Hypothetical protein T06D8.1a [Caenorhabditis elegans] ref|NP_496398.1| T06D8.1a [Caenorhabditis elegans] 0.0
blast CAD59157 Hypothetical protein T06D8.1b [Caenorhabditis elegans] ref|NP_872044.1| T06D8.1b [Caenorhabditis elegans] 0.0
blast CAE59552 Hypothetical protein CBG02948 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.7E-6
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.0E-12
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.4E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.1E-18
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.1E-8
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 6.3E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-11
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.9E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.2E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 7.1E-11
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 6.6E-9
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 3.6E-15
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 6.5E-20
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.8E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.2E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 8.5E-20
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.3E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.4E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.4E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 8.3E-12
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 3.5E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 2.7E-6
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 6.5E-20
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.8E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.2E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 8.5E-20
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.3E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.4E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.4E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 8.3E-12
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 3.5E-21
Sequence
Target Sequence 
>C. ELEGANS:178918_AT
acatgacatcacatcgttctcagttgatgagccatcgtcaagctcggacaacatcccact
tcatcaaggattgagttccaaatgcgatggaagagttgagttccaagtgattcctgttgc
cagtctcccgaaattaaatattacaaatgatgttcctgcttcttccccagctgattgtgc
tcgcaagtgcttcgaaatgaagaactgtaaaactgccggtttcattccatcaccatctgg
aaccatcgcccaaggagtttgcctcctgacctctgatgacgttgtctgcggaaaccttgc
cgacttcgttccacaacacgctgctcttcatccgttcgtggtgtcttgcatccgatgcac
atcctgtacgtacaacatccgtccggtgacgccgactcgaacgatgccgacgatgaaggt
gcatgagcaggcggacaatgtacaagaatgcgccaaattgtgtgcggacatgaaatgcac
aatggcaaagtacgagaataacacgaagatttgctcaatgacgcgcgagccggtgacaga
agagacgtgtcctcaagaagttgccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGACATCACATCGTTCTCAGTT 189 107 4875 Antisense
GCCATCGTCAAGCTCGGACAACATC 504 281 4905 Antisense
GAGTTCCAAGTGATTCCTGTTGCCA 376 397 4972 Antisense
TGTTGCCAGTCTCCCGAAATTAAAT 659 557 4989 Antisense
TACAAATGATGTTCCTGCTTCTTCC 315 643 5016 Antisense
AGCTGATTGTGCTCGCAAGTGCTTC 493 79 5043 Antisense
TAAAACTGCCGGTTTCATTCCATCA 195 639 5082 Antisense
CATCCGATGCACATCCTGTACGTAC 467 211 5223 Antisense
TACGTACAACATCCGTCCGGTGACG 252 593 5241 Antisense
CCGACTCGAACGATGCCGACGATGA 120 263 5266 Antisense
GACGTGTCCTCAAGAAGTTGCCACA 286 377 5418 Antisense
Sequence Source Affymetrix Proprietary Database