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[178917_at]

Description C25F9.9 /REP_DB=WormBase Gene ID /WP=CE17473 /TR=O62073 /GB=CAB03917.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 45      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 76.7
(3)
A 		48
(0.6)
A 		9.9
(-2.5)
A 		4
(-3)
A 		73
B 89.7
(3)
A 		39.6
(-0.4)
A 		15.7
(-2.1)
A 		2.2
(-3)
A 		88
C 129
(3)
A 		96.8
(0.4)
A 		55.7
(-2.9)
A 		54.3
(-3)
A 		75
avr 98.5
(3) 		61.5
(0.2) 		27.1
(-2.5) 		20.2
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 7.8
(-2.8)
A 		72.7
(2.5)
A 		78.4
(3)
A 		71.5
(2.4)
A 		4.9
(-3)
A 		21.8
(-1.6)
A 		74
B 36.7
(0.3)
A 		63.1
(3)
A 		58.6
(2.5)
A 		7.1
(-2.7)
A 		48
(1.5)
A 		4.5
(-3)
A 		59
C 18.7
(-1.9)
A 		21
(-1.7)
A 		32.9
(-0.8)
A 		79.1
(3)
A 		22.6
(-1.6)
A 		5.4
(-3)
A 		74
avr 21.1
(-1.6) 		52.3
(2.4) 		56.6
(3) 		52.6
(2.5) 		25.2
(-1.1) 		10.6
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 27.9
(3)
A 		10.4
(-0.8)
A 		2.6
(-2.6)
A 		0.6
(-3)
A 		27
B 28.6
(3)
A 		9.8
(-1)
A 		3.6
(-2.3)
A 		0.5
(-3)
A 		28
C 42.7
(3)
A 		27.8
(0.3)
A 		19.4
(-1.2)
A 		9.2
(-3)
A 		34
avr 33.1
(3) 		16
(-0.5) 		8.5
(-2) 		3.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.4
(-3)
A 		25.9
(3)
A 		17.1
(0.8)
A 		18.1
(1.1)
A 		1.5
(-3)
A 		5.3
(-2)
A 		25
B 12.8
(0.5)
A 		21
(3)
A 		14.2
(0.9)
A 		1.9
(-2.9)
A 		19.5
(2.5)
A 		1.7
(-3)
A 		19
C 6.9
(-0.8)
A 		6.4
(-1)
A 		8.4
(-0.2)
A 		15.9
(3)
A 		7.3
(-0.7)
A 		1.8
(-3)
A 		14
avr 7
(-1.3) 		17.8
(3) 		13.2
(1.1) 		12
(0.7) 		9.4
(-0.4) 		2.9
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13919
Sequence Type Exemplar sequence
Representative Public ID C25F9.9 NCBI
Target Description C25F9.9 /REP_DB=WormBase Gene ID /WP=CE17473 /TR=O62073 /GB=CAB03917.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075378 NCBI Caenorhabditis elegans C25F9.9 (C25F9.9) mRNA, complete cds. 11/11 None
GENEFINDER00000028330 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19418344:19421484:1 10/11 None
C25F9.9 ENSEMBL cdna:known chromosome:CEL140:V:19419931:19420467:1 gene:C25F9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19419930-19420467(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25F9.9
Entrez Gene 182908 Entrez gene
SwissProt O62073 EMBL-EBI
WormBase CE17473 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03917 Hypothetical protein C25F9.9 [Caenorhabditis elegans] ref|NP_507779.1| C25F9.9 [Caenorhabditis elegans] 1.0E-89
blast CAB03917 Hypothetical protein C25F9.9 [Caenorhabditis elegans] ref|NP_507779.1| C25F9.9 [Caenorhabditis elegans] 3.0E-81
blast CAA21504 Hypothetical protein Y43F8B.13 [Caenorhabditis elegans] ref|NP_507786.1| Y43F8B.13 [Caenorhabditis elegans] 4.0E-75
blast CAA21504 Hypothetical protein Y43F8B.13 [Caenorhabditis elegans] ref|NP_507786.1| Y43F8B.13 [Caenorhabditis elegans] 3.0E-29
blast CAI91179 Hypothetical protein C25F9.10 [Caenorhabditis elegans] ref|NP_001023679.1| C25F9.10 [Caenorhabditis elegans] 8.0E-19
blast CAA21517 Hypothetical protein Y43F8B.12 [Caenorhabditis elegans] ref|NP_507787.1| Y43F8B.12 [Caenorhabditis elegans] 3.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507779.1 1 10-32
C25F9.9 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:178917_AT
ctggtgctcttttccgagtgtatttggggcgccgcgaatgtttgcataaagacgtttttt
cttgtgaatttcaaaactttgctaatgaatcacggggatatcagcaactttatggatgtt
gtgattgatgaaagctattccgacggtcttggtagactgaaacttagcatggcgtttaaa
aaagctgaaaaatgtcacaaaaacttttacgagctgaatttcatagataaggatgagaga
aacaaatatattgaatcggtgaaagacatgaaaatatgtttcagtgaagtgaatgaagat
acaatgaaaaaaatacgagaaatattatggcctattgggcaattttattcaaatggcaaa
caattttcagacttaacacgggaattaccaaaagaaagcacagtggcgtttggaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTGCTCTTTTCCGAGTGTATTT 694 239 37 Antisense
AGTGTATTTGGGGCGCCGCGAATGT 635 57 53 Antisense
GGCGCCGCGAATGTTTGCATAAAGA 408 541 64 Antisense
AAAACTTTGCTAATGAATCACGGGG 223 131 109 Antisense
AATCACGGGGATATCAGCAACTTTA 277 171 124 Antisense
GAAAGCTATTCCGACGGTCTTGGTA 269 359 166 Antisense
GGTAGACTGAAACTTAGCATGGCGT 184 505 187 Antisense
AAAACTTTTACGAGCTGAATTTCAT 678 119 236 Antisense
AATATTATGGCCTATTGGGCAATTT 508 173 357 Antisense
GGCAAACAATTTTCAGACTTAACAC 92 535 391 Antisense
GAAAGCACAGTGGCGTTTGGAAAAG 397 359 430 Antisense
Sequence Source Affymetrix Proprietary Database