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[178916_at]

Description F15A2.4 /REP_DB=WormBase Gene ID /WP=CE15837 /TR=Q19474 /GB=CAA94133.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 10      6grp_cgc > 80      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 45.6
(-3)
A 		68
(-2.1)
A 		68.3
(-2.1)
A 		191.6
(3)
P 		146
B 48.5
(-3)
A 		78.2
(0.1)
A 		52.3
(-2.6)
A 		106.5
(3)
P 		58
C 59.5
(-1.5)
A 		52
(-2.1)
A 		39.5
(-3)
A 		120.5
(3)
P 		81
avr 51.2
(-3) 		66.1
(-2) 		53.4
(-2.9) 		139.5
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 61.5
(2.4)
A 		44.2
(0.8)
A 		61.8
(2.4)
P 		16.3
(-1.8)
A 		67.7
(3)
M 		3.5
(-3)
A 		64
B 47
(1)
A 		49.8
(1.4)
A 		60.9
(3)
A 		47.4
(1.1)
A 		49.7
(1.4)
A 		18.9
(-3)
A 		42
C 52.6
(0.1)
A 		71
(1.8)
P 		83.2
(3)
A 		23.1
(-2.7)
A 		25.2
(-2.5)
A 		19.7
(-3)
A 		64
avr 53.7
(1.4) 		55
(1.5) 		68.6
(3) 		28.9
(-1.4) 		47.5
(0.7) 		14
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.6
(-2.2)
A 		14.8
(-3)
A 		17.9
(-1.6)
A 		28
(3)
P 		13
B 15.5
(-1.1)
A 		19.3
(1.1)
A 		12.1
(-3)
A 		22.7
(3)
P 		11
C 19.7
(2.4)
A 		14.9
(-2)
A 		13.8
(-3)
A 		20.3
(3)
P 		7
avr 17.3
(-1.2) 		16.3
(-1.9) 		14.6
(-3) 		23.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.3
(0.2)
A 		15.7
(1.6)
A 		13.5
(0.9)
P 		4.1
(-2)
A 		20.4
(3)
M 		0.8
(-3)
A 		20
B 16.3
(1.2)
A 		16.6
(1.4)
A 		14.8
(0.5)
A 		12.6
(-0.5)
A 		20.2
(3)
A 		7
(-3)
A 		13
C 19.5
(2.2)
A 		21.7
(3)
P 		21.2
(2.8)
A 		4.7
(-3)
A 		8.2
(-1.8)
A 		6.6
(-2.3)
A 		17
avr 15.7
(2) 		18
(3) 		16.5
(2.3) 		7.1
(-2) 		16.3
(2.2) 		4.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17487
Sequence Type Exemplar sequence
Representative Public ID F15A2.4 NCBI
Target Description F15A2.4 /REP_DB=WormBase Gene ID /WP=CE15837 /TR=Q19474 /GB=CAA94133.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077850 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-50) (srd-50) mRNA, complete cds. 11/11 None
GENEFINDER00000028421 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13478542:13481476:-1 11/11 None
F15A2.4 ENSEMBL cdna:known chromosome:CEL140:X:13478542:13481724:-1 gene:F15A2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028418 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13478541-13481724(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-50
Ensembl F15A2.4
Entrez Gene 184507 Entrez gene
SwissProt Q19474 EMBL-EBI
WormBase CE15837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94133 Hypothetical protein F15A2.4 [Caenorhabditis elegans] ref|NP_510251.1| Serpentine Receptor, class D (delta) family member (srd-50) [Caenorhabditis elegans] sp|Q19474|SRD50_CAEEL Serpentine receptor class delta-50 (Protein srd-50) 1.0E-174
blast CAA94133 Hypothetical protein F15A2.4 [Caenorhabditis elegans] ref|NP_510251.1| Serpentine Receptor, class D (delta) family member (srd-50) [Caenorhabditis elegans] sp|Q19474|SRD50_CAEEL Serpentine receptor class delta-50 (Protein srd-50) 1.0E-143
blast CAE63140 Hypothetical protein CBG07442 [Caenorhabditis briggsae] 2.0E-75
blast CAE63140 Hypothetical protein CBG07442 [Caenorhabditis briggsae] 2.0E-61
blast CAA94132 Hypothetical protein F15A2.3 [Caenorhabditis elegans] ref|NP_510252.1| Serpentine Receptor, class D (delta) family member (srd-51) [Caenorhabditis elegans] sp|Q19473|SRD51_CAEEL Serpentine receptor class delta-51 (Protein srd-51) 7.0E-41
blast CAA94132 Hypothetical protein F15A2.3 [Caenorhabditis elegans] ref|NP_510252.1| Serpentine Receptor, class D (delta) family member (srd-51) [Caenorhabditis elegans] sp|Q19473|SRD51_CAEEL Serpentine receptor class delta-51 (Protein srd-51) 9.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510251.1 7 13-35,48-67,107-129,149-166,200-222,248-270,285-307
F15A2.4 7 13-35,48-67,107-129,149-166,200-222,248-270,285-307
GENEFINDER00000028421 5 75-97,117-134,168-190,216-238,253-275
Sequence
Target Sequence 
>C. ELEGANS:178916_AT
cagttttacacccaacctatggtcttgaaaactatgccattcttggattttcggatgtta
aaactgttgccgcatcatcgcagactctaatgctaatgataggactttacggtactccat
ttattgcattggtttttagaaaaaaaataatcaaaatccttcattcgtcgagatcctatc
acgctgaaaagattgtgcagacaaagagcatgattcagggactcactctccaaacattgc
ttcctttaatctgctactgtcccggattcacgtattacatatattcacagtatacccaat
cgtcaagtcttttcgtagaatttgcagtcagcccatacggatttgtctatacaatttttg
acccacttcttacaatttactatgtgctcccgtatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTTTACACCCAACCTATGGTCT 502 177 542 Antisense
TAAAACTGTTGCCGCATCATCGCAG 100 641 600 Antisense
GACTTTACGGTACTCCATTTATTGC 51 373 644 Antisense
CATTCGTCGAGATCCTATCACGCTG 197 217 703 Antisense
TGATTCAGGGACTCACTCTCCAAAC 196 565 752 Antisense
TGCTTCCTTTAATCTGCTACTGTCC 394 579 779 Antisense
TACTGTCCCGGATTCACGTATTACA 627 647 796 Antisense
GTATACCCAATCGTCAAGTCTTTTC 184 453 831 Antisense
GCAGTCAGCCCATACGGATTTGTCT 446 311 865 Antisense
TACAATTTTTGACCCACTTCTTACA 507 641 891 Antisense
CAATTTACTATGTGCTCCCGTATCG 302 181 914 Antisense
Sequence Source Affymetrix Proprietary Database