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[178914_s_at]

Description C55A1.4 /REP_DB=WormBase Gene ID /WP=CE08990 /TR=O18646 /GB=CAB04003.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 58.3
(-1.9)
M 		19.3
(-3)
A 		34.3
(-2.6)
A 		226.9
(3)
A 		208
B 86
(0.2)
P 		23.5
(-3)
A 		37.7
(-2.3)
A 		140.8
(3)
P 		117
C 77.9
(-0.3)
P 		7.6
(-3)
A 		8.5
(-3)
A 		164.1
(3)
A 		157
avr 74.1
(-0.9) 		16.8
(-3) 		26.8
(-2.6) 		177.3
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 62.6
(2.4)
A 		38.4
(-2.2)
A 		45.6
(-0.8)
A 		34.3
(-3)
A 		36.1
(-2.7)
A 		65.7
(3)
P 		31
B 75.5
(3)
P 		26.8
(-1.8)
A 		14.7
(-3)
A 		34
(-1.1)
A 		19.6
(-2.5)
A 		71.2
(2.6)
P 		61
C 69.6
(2.8)
P 		25.4
(-1.2)
A 		9.3
(-2.6)
A 		5.9
(-2.9)
A 		5.2
(-3)
A 		72.3
(3)
P 		67
avr 69.2
(2.9) 		30.2
(-1.8) 		23.2
(-2.6) 		24.7
(-2.5) 		20.3
(-3) 		69.7
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 21.2
(0.5)
M 		4.2
(-3)
A 		9
(-2)
A 		33.2
(3)
A 		29
B 27.4
(2.4)
P 		5.8
(-3)
A 		8.7
(-2.3)
A 		30
(3)
P 		24
C 25.8
(2.6)
P 		2.2
(-3)
A 		3
(-2.8)
A 		27.7
(3)
A 		26
avr 24.8
(1.7) 		4.1
(-3) 		6.9
(-2.4) 		30.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.5
(-0.7)
A 		13.6
(1)
A 		9.9
(-2)
A 		8.7
(-3)
A 		10.9
(-1.2)
A 		16
(3)
P 		7
B 26.3
(2.9)
P 		8.9
(-1.6)
A 		3.6
(-3)
A 		9
(-1.6)
A 		8
(-1.9)
A 		26.6
(3)
P 		23
C 25.8
(3)
P 		7.8
(-1.4)
A 		2.4
(-2.7)
A 		1.2
(-3)
A 		1.7
(-2.9)
A 		24.2
(2.6)
P 		25
avr 21.2
(2.6) 		10.1
(-1.3) 		5.3
(-3) 		6.3
(-2.6) 		6.9
(-2.4) 		22.3
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14146
Sequence Type Exemplar sequence
Representative Public ID C55A1.4 NCBI
Target Description C55A1.4 /REP_DB=WormBase Gene ID /WP=CE08990 /TR=O18646 /GB=CAB04003.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074489(11), NM_074491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074489 NCBI Caenorhabditis elegans C55A1.4 (C55A1.4) mRNA, complete cds. 11/11 None
NM_074491 NCBI Caenorhabditis elegans C55A1.7 (C55A1.7) mRNA, complete cds. 11/11 None
SNAP00000022796 ENSEMBL cdna:SNAP chromosome:CEL140:V:15645223:15645876:-1 11/11 None
SNAP00000022798 ENSEMBL cdna:SNAP chromosome:CEL140:V:15649567:15650220:-1 11/11 None
GENEFINDER00000022801 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15649567:15650220:-1 11/11 None
C55A1.4 ENSEMBL cdna:known chromosome:CEL140:V:15645223:15645876:-1 gene:C55A1.4 11/11 None
C55A1.7 ENSEMBL cdna:known chromosome:CEL140:V:15649567:15650220:-1 gene:C55A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15645222-15645876(-) 100.0 100.0
chrV:15649566-15650220(-) 99.35 99.35
Public Domain and Genome References
Gene Title

Ensembl C55A1.4
C55A1.7
Entrez Gene 183825 Entrez gene
183828 Entrez gene
WormBase CE08990 Wormbase
CE08990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04003 Hypothetical protein C55A1.7 [Caenorhabditis elegans] emb|CAB04002.1| Hypothetical protein C55A1.4 [Caenorhabditis elegans] ref|NP_506892.1| C55A1.7 [Caenorhabditis elegans] ref|NP_506890.1| C55A1.4 [Caenorhabditis elegans] 3.0E-50
blast CAB01161 Hypothetical protein F14D7.5 [Caenorhabditis elegans] ref|NP_506543.1| F14D7.5 [Caenorhabditis elegans] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:178914_S_AT
gttcaagcaactgtctatcgttctggttgtcttcgcagtgatggctcatgccacgatgaa
ccttccaagtcaagaggagtacaacgccgaaatgaaatcagctggaatgtcgcaaagttc
gattgatggcttgaacaacctgagccaaaagtttgtgagccaatacccagtcgttcagtc
caacaaatcggcagcagataaatttatggccgagtacactaccgaagcgcaaaactttgt
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAGCAACTGTCTATCGTTCTG 166 445 15 Antisense
TCTATCGTTCTGGTTGTCTTCGCAG 383 615 28 Antisense
GTCTTCGCAGTGATGGCTCATGCCA 156 469 43 Antisense
TGCCACGATGAACCTTCCAAGTCAA 420 587 63 Antisense
AAGTCAAGAGGAGTACAACGCCGAA 436 157 81 Antisense
AAATCAGCTGGAATGTCGCAAAGTT 288 115 109 Antisense
GATTGATGGCTTGAACAACCTGAGC 202 433 135 Antisense
CCCAGTCGTTCAGTCCAACAAATCG 609 257 180 Antisense
GTTCAGTCCAACAAATCGGCAGCAG 691 443 187 Antisense
TTATGGCCGAGTACACTACCGAAGC 65 681 218 Antisense
ACTACCGAAGCGCAAAACTTTGTCA 218 1 232 Antisense
Sequence Source Affymetrix Proprietary Database