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[178913_at]

Description C01H6.6 /REP_DB=WormBase Gene ID /WP=CE05189 /TR=Q17586 /GB=CAA95784.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 52.1
(-3)
A 		73.3
(-1.4)
A 		68.1
(-1.8)
A 		131.8
(3)
P 		80
B 66.3
(-3)
A 		128.1
(1)
A 		117
(0.3)
A 		158.8
(3)
A 		93
C 121.1
(-1)
A 		138.1
(-0.5)
A 		62.1
(-3)
A 		241.4
(3)
A 		179
avr 79.8
(-3) 		113.2
(-0.9) 		82.4
(-2.8) 		177.3
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 59.9
(-0.2)
A 		14.9
(-3)
A 		99.7
(2.3)
A 		111.2
(3)
A 		108.7
(2.8)
A 		103.5
(2.5)
A 		96
B 32.6
(-3)
A 		75.2
(-0.4)
A 		60.9
(-1.3)
A 		84.2
(0.2)
A 		73.9
(-0.5)
A 		130.8
(3)
A 		98
C 38
(-3)
A 		99.6
(2.7)
A 		54.4
(-1.5)
A 		89
(1.7)
A 		50.6
(-1.8)
A 		103.3
(3)
A 		65
avr 43.5
(-3) 		63.2
(-1.3) 		71.7
(-0.5) 		94.8
(1.5) 		77.7
(-0) 		112.5
(3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 19
(2.5)
A 		15.9
(-3)
A 		17.8
(0.4)
A 		19.3
(3)
P 		3
B 21.2
(-3)
A 		31.6
(2)
A 		27.1
(-0.2)
A 		33.8
(3)
A 		13
C 40.1
(2.8)
A 		39.7
(2.7)
A 		21.7
(-3)
A 		40.7
(3)
A 		19
avr 26.8
(0) 		29.1
(1.5) 		22.2
(-3) 		31.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 11
(-1.8)
A 		5.3
(-3)
A 		21.7
(0.6)
A 		28.2
(2)
A 		32.8
(3)
A 		25.2
(1.3)
A 		28
B 11.3
(-3)
A 		25
(-0.8)
A 		14.8
(-2.4)
A 		22.3
(-1.2)
A 		30
(-0)
A 		48.8
(3)
A 		38
C 14.1
(-2.9)
A 		30.4
(1.8)
A 		13.9
(-3)
A 		17.9
(-1.8)
A 		16.4
(-2.3)
A 		34.6
(3)
A 		21
avr 12.1
(-3) 		20.2
(-1) 		16.8
(-1.8) 		22.8
(-0.3) 		26.4
(0.6) 		36.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1047
Sequence Type Exemplar sequence
Representative Public ID C01H6.6 NCBI
Target Description C01H6.6 /REP_DB=WormBase Gene ID /WP=CE05189 /TR=Q17586 /GB=CAA95784.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059639 NCBI Caenorhabditis elegans C01H6.6 (C01H6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000008124 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7230326:7232266:1 11/11 None
SNAP00000008120 ENSEMBL cdna:SNAP chromosome:CEL140:I:7230597:7232266:1 11/11 None
C01H6.6 ENSEMBL cdna:known chromosome:CEL140:I:7230597:7232266:1 gene:C01H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7230527-7232197(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01H6.6
Entrez Gene 182093 Entrez gene
SwissProt Q17586 EMBL-EBI
WormBase CE34153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95784 Hypothetical protein C01H6.6 [Caenorhabditis elegans] ref|NP_492040.2| C01H6.6 [Caenorhabditis elegans] 0.0
blast CAA95784 Hypothetical protein C01H6.6 [Caenorhabditis elegans] ref|NP_492040.2| C01H6.6 [Caenorhabditis elegans] 1.0E-173
blast CAE74241 Hypothetical protein CBG21926 [Caenorhabditis briggsae] 8.0E-81
blast CAE74241 Hypothetical protein CBG21926 [Caenorhabditis briggsae] 1.0E-80
blast CAE74241 Hypothetical protein CBG21926 [Caenorhabditis briggsae] 5.0E-77
blast EAA01004 ENSANGP00000017636 [Anopheles gambiae str. PEST] ref|XP_320945.2| ENSANGP00000017636 [Anopheles gambiae str. PEST] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002550 EMBL-EBI CBS 2.4E-33
Pfam IPR000644 EMBL-EBI CBS domain 0.0034
Pfam IPR002550 EMBL-EBI CBS 2.4E-33
Pfam IPR000644 EMBL-EBI CBS domain 0.0034
Pfam IPR002550 EMBL-EBI CBS 3.5E-24
Pfam IPR000644 EMBL-EBI CBS domain 0.0034
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492040.2 4 98-120,157-179,189-211,224-246
C01H6.6 4 98-120,157-179,189-211,224-246
GENEFINDER00000008124 5 2-19,147-169,206-228,238-260,273-295
SNAP00000008120 3 94-116,126-148,161-183
Sequence
Target Sequence 
>C. ELEGANS:178913_AT
ttgatatcaaccgcattgctcctcattttcacggaaatcctaccgtctctgatttttacc
aaaaatgctcttgccattgctagccgtctacaatattttgtcattttcacgatgtgtatc
acttcacctatcagttacccactggctatgctcctaaatatcatattgggcaaggagaat
gctgacgacagtgctccgttggatctagatgctctacaaatcgacgagctagaagatgag
gaagccgccgatggaaataattttcatgagattcgtggagttttaaatatcacggatatg
atgctcctgatggacgatgaaggaagaggatcagacacagatttaacacttggaactatg
ttatcggttctcgaaaaaagaagaaagcattgttttgttctcgacacaatgccagtcgag
cacttcatgtcagaacttcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATATCAACCGCATTGCTCCTCA 275 707 466 Antisense
ATTGCTCCTCATTTTCACGGAAATC 233 7 480 Antisense
GAAATCCTACCGTCTCTGATTTTTA 119 363 499 Antisense
TTGCCATTGCTAGCCGTCTACAATA 288 701 536 Antisense
CACGATGTGTATCACTTCACCTATC 661 199 573 Antisense
TCACCTATCAGTTACCCACTGGCTA 83 627 589 Antisense
CCACTGGCTATGCTCCTAAATATCA 515 273 604 Antisense
TGACGACAGTGCTCCGTTGGATCTA 325 569 648 Antisense
GAAAGCATTGTTTTGTTCTCGACAC 608 359 848 Antisense
GACACAATGCCAGTCGAGCACTTCA 607 365 868 Antisense
GAGCACTTCATGTCAGAACTTCAAC 24 391 883 Antisense
Sequence Source Affymetrix Proprietary Database