[Home] | [Total List]

[178912_at]

Description F35G2.5 /REP_DB=WormBase Gene ID /WP=CE05812 /TR=Q20066 /GB=CAA93470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 3.5
(-3)
A 		79
(3)
P 		60.2
(1.5)
P 		10.7
(-2.4)
A 		76
B 4.5
(-3)
A 		82.2
(3)
A 		48.8
(0.4)
A 		6
(-2.9)
A 		78
C 3.1
(-3)
A 		78.8
(2.5)
P 		86.1
(3)
P 		38.4
(-0.4)
A 		83
avr 3.7
(-3) 		80
(3) 		65
(1.8) 		18.4
(-1.8) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 18.6
(-2)
A 		48.8
(0.1)
P 		55.2
(0.5)
P 		91.3
(3)
P 		25.3
(-1.5)
M 		3.3
(-3)
A 		88
B 8.6
(-3)
A 		50.3
(1)
A 		42.2
(0.2)
A 		70.8
(3)
P 		51.3
(1.1)
P 		26.7
(-1.3)
A 		62
C 7.5
(-3)
A 		51
(-0.5)
P 		43.9
(-0.9)
P 		113
(3)
P 		60
(-0)
P 		34.4
(-1.5)
A 		106
avr 11.6
(-3) 		50
(-0.1) 		47.1
(-0.3) 		91.7
(3) 		45.5
(-0.5) 		21.5
(-2.3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.3
(-3)
A 		17.1
(3)
P 		15.7
(2.5)
P 		1.6
(-2.9)
A 		16
B 1.4
(-3)
A 		20.3
(3)
A 		11.3
(0.2)
A 		1.3
(-3)
A 		19
C 1
(-3)
A 		22.6
(1.5)
P 		30
(3)
P 		6.5
(-1.9)
A 		29
avr 1.2
(-3) 		20
(3) 		19
(2.7) 		3.1
(-2.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.4
(-2.3)
A 		17.4
(1.5)
P 		12
(0)
P 		23.1
(3)
P 		7.6
(-1.2)
M 		0.8
(-3)
A 		22
B 3
(-3)
A 		16.7
(1.6)
A 		10.2
(-0.6)
A 		18.8
(2.3)
P 		20.9
(3)
P 		10
(-0.7)
A 		18
C 2.8
(-3)
A 		15.6
(0.9)
P 		11.2
(-0.5)
P 		22.7
(3)
P 		19.4
(2)
P 		11.5
(-0.4)
A 		20
avr 3.1
(-3) 		16.6
(1.4) 		11.1
(-0.4) 		21.5
(3) 		16
(1.2) 		7.4
(-1.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8453
Sequence Type Exemplar sequence
Representative Public ID F35G2.5 NCBI
Target Description F35G2.5 /REP_DB=WormBase Gene ID /WP=CE05812 /TR=Q20066 /GB=CAA93470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069917(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069917 NCBI Caenorhabditis elegans F35G2.5 (F35G2.5) mRNA, complete cds. 10/11 None
GENEFINDER00000015560 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12218452:12222792:1 11/11 None
F35G2.5 ENSEMBL cdna:known chromosome:CEL140:IV:12219655:12222792:1 gene:F35G2.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015557 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12219660-12222798(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35G2.5
Entrez Gene 185320 Entrez gene
SwissProt Q20066 EMBL-EBI
WormBase CE35524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93470 Hypothetical protein F35G2.5 [Caenorhabditis elegans] ref|NP_502318.2| F35G2.5 [Caenorhabditis elegans] 1.0E-162
blast CAA93470 Hypothetical protein F35G2.5 [Caenorhabditis elegans] ref|NP_502318.2| F35G2.5 [Caenorhabditis elegans] 1.0E-140
blast CAE62203 Hypothetical protein CBG06253 [Caenorhabditis briggsae] 5.0E-35
blast CAE62203 Hypothetical protein CBG06253 [Caenorhabditis briggsae] 6.0E-22
blast CAE62204 Hypothetical protein CBG06254 [Caenorhabditis briggsae] 2.0E-20
blast CAE62204 Hypothetical protein CBG06254 [Caenorhabditis briggsae] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502318.2 1 13-32
F35G2.5 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:178912_AT
gcagttcccctgaatgaaagtggtgaaaaactgacaatcgattcgttttatgatgacaag
ttgaaacagaagcaggaagaggaacaagttgtcgtgccgagacctgaaattgataatgag
gagataacaacaataaaccttgaagaacgaatgaattcaaagtttgcagaaactgaaaaa
ggtaccgaagataatcacgaggagccgactacaattaaatttgaagaaaatacgacgttg
agaaaccctgaaagttctgaaaaagaacccaaaattgatcaaaatgattcgataaccatt
agctttgaaaaaatgttgactccaaaaaatgaagagtatgagagaggcgcagaagaatcc
atcactgcaagtagtgatgatttcgagatgattccaaaaaatgagacagattcattggat
attattggaaaatctgaagcagtaaaatcatggcttgaaaaacgaaaaaatctccccaaa
tcactatcagaagtagaatcatctcttcatgttgatgaagctgctcaattaagtcataaa
agaaatcaaatagttgagccatcagatccagacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTCCCCTGAATGAAAGTGGTG 254 313 331 Antisense
GAGGAACAAGTTGTCGTGCCGAGAC 376 405 409 Antisense
TCGTGCCGAGACCTGAAATTGATAA 487 605 422 Antisense
TAATCACGAGGAGCCGACTACAATT 186 633 522 Antisense
ATACGACGTTGAGAAACCCTGAAAG 546 1 560 Antisense
GATTCGATAACCATTAGCTTTGAAA 466 431 616 Antisense
GAGAGGCGCAGAAGAATCCATCACT 585 395 672 Antisense
AGTGATGATTTCGAGATGATTCCAA 55 61 703 Antisense
AAAAATCTCCCCAAATCACTATCAG 698 127 796 Antisense
AAGTAGAATCATCTCTTCATGTTGA 188 157 821 Antisense
AGTTGAGCCATCAGATCCAGACATT 309 65 882 Antisense
Sequence Source Affymetrix Proprietary Database