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[178910_at]

Description T03E6.5 /REP_DB=WormBase Gene ID /WP=CE16331 /TR=O45738 /GB=CAB07279.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 28      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 48.5
(-0.5)
A 		38.5
(-1.2)
A 		11.2
(-3)
A 		101.1
(3)
A 		90
B 27.2
(-3)
A 		80.5
(3)
A 		36.4
(-2)
A 		37.5
(-1.8)
A 		53
C 49.2
(1.2)
A 		58.1
(3)
A 		27.7
(-3)
A 		55.8
(2.5)
A 		30
avr 41.6
(-0.5) 		59
(2.1) 		25.1
(-3) 		64.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 26.7
(-0.6)
A 		3.8
(-3)
A 		55.3
(2.4)
A 		61.3
(3)
A 		29
(-0.4)
A 		25.7
(-0.7)
A 		58
B 21.4
(0.3)
A 		33.9
(3)
A 		6
(-3)
A 		34.1
(3)
A 		19.9
(-0)
A 		32.2
(2.6)
A 		28
C 20.5
(-0.2)
A 		11.7
(-3)
A 		18.4
(-0.8)
A 		18.6
(-0.8)
A 		30.3
(3)
A 		17
(-1.3)
A 		19
avr 22.9
(-1.2) 		16.5
(-3) 		26.6
(-0.2) 		38
(3) 		26.4
(-0.2) 		25
(-0.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.7
(3)
A 		8.4
(-0.8)
A 		2.9
(-3)
A 		14.8
(1.8)
A 		15
B 8.7
(-2.6)
A 		19.9
(3)
A 		8.4
(-2.8)
A 		8
(-3)
A 		12
C 16.3
(2.7)
A 		16.7
(3)
A 		9.6
(-2.8)
A 		9.4
(-3)
A 		7
avr 14.2
(2.4) 		15
(3) 		7
(-3) 		10.7
(-0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.9
(-1.5)
A 		1.4
(-3)
A 		12
(1.5)
A 		15.6
(3)
A 		8.7
(0.1)
A 		6.3
(-0.9)
A 		14
B 7.4
(0.4)
A 		11.3
(2.6)
A 		1.5
(-3)
A 		9
(1.3)
A 		8.1
(0.8)
A 		12
(3)
A 		11
C 7.6
(0.9)
A 		3.6
(-3)
A 		4.7
(-1.9)
A 		3.7
(-2.9)
A 		9.8
(3)
A 		5.7
(-1)
A 		6
avr 6.6
(-1.2) 		5.4
(-3) 		6.1
(-2) 		9.4
(3) 		8.9
(2.3) 		8
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13570
Sequence Type Exemplar sequence
Representative Public ID T03E6.5 NCBI
Target Description T03E6.5 /REP_DB=WormBase Gene ID /WP=CE16331 /TR=O45738 /GB=CAB07279.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074797 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-269) (srh-269) mRNA, complete cds. 11/11 None
GENEFINDER00000008704 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16592683:16594624:-1 11/11 None
T03E6.5 ENSEMBL cdna:known chromosome:CEL140:V:16592683:16594624:-1 gene:T03E6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16592682-16594624(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-269
Ensembl T03E6.5
Entrez Gene 188018 Entrez gene
SwissProt O45738 EMBL-EBI
WormBase CE16331 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07279 Hypothetical protein T03E6.5 [Caenorhabditis elegans] ref|NP_507198.1| Serpentine Receptor, class H family member (srh-269) [Caenorhabditis elegans] 1.0E-176
blast CAE74772 Hypothetical protein CBG22601 [Caenorhabditis briggsae] 1.0E-102
blast NP_503718 Serpentine Receptor, class H family member (srh-271) [Caenorhabditis elegans] gb|AAF60378.2| Serpentine receptor, class h protein 271 [Caenorhabditis elegans] 6.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507198.1 7 10-29,50-72,92-114,127-149,184-206,227-249,264-286
T03E6.5 7 10-29,50-72,92-114,127-149,184-206,227-249,264-286
GENEFINDER00000008704 7 10-29,50-72,92-114,127-149,184-206,227-249,264-286
Sequence
Target Sequence 
>C. ELEGANS:178910_AT
ttatatctggcgtcagcgttctgctttctaccttcttatttaatgattcctgagcaagag
gcagcgctcgcggaagttttagagggaatacccgagctccgcgagtacatcaaagatttc
gactttctagttctctcctcagattcttatgggttttttctcactcttatcattttgatt
accctggtcactgccacgtcactaacatttgcctggcttcttcacgctaatataagagat
cgagcaggaaataatgcttccaagagaacagtgcaactccaacaaatttttttcagagct
attttgattcaaacttcaatgccaatttgtgttcttatacttccatgttcctacctcgca
ttttcaatgttcacgggatactttaaccaagcagccaacaacctgagcttcatcatcaca
gcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATATCTGGCGTCAGCGTTCTGCT 395 679 409 Antisense
CTGCTTTCTACCTTCTTATTTAATG 578 237 429 Antisense
AAGAGGCAGCGCTCGCGGAAGTTTT 122 153 464 Antisense
GAGCTCCGCGAGTACATCAAAGATT 651 387 502 Antisense
AGATTTCGACTTTCTAGTTCTCTCC 562 65 522 Antisense
GTTCTCTCCTCAGATTCTTATGGGT 370 443 538 Antisense
TATGGGTTTTTTCTCACTCTTATCA 360 655 556 Antisense
CATTTTGATTACCCTGGTCACTGCC 208 215 579 Antisense
TGCCACGTCACTAACATTTGCCTGG 241 587 600 Antisense
TGTTCTTATACTTCCATGTTCCTAC 125 563 738 Antisense
AACCTGAGCTTCATCATCACAGCGT 473 147 808 Antisense
Sequence Source Affymetrix Proprietary Database