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[178909_at]

Description T26H5.8 /REP_DB=WormBase Gene ID /WP=CE20106 /TR=Q9XTI7 /GB=CAA21488.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      6grp_total > 84      4grp_total > 25      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 34.7
(-3)
A
102
(3)
A
70.4
(0.2)
A
87.9
(1.7)
A
67
B 63
(3)
A
55.9
(2.3)
A
59.7
(2.7)
A
5.6
(-3)
A
57
C 52
(-1.3)
A
27
(-3)
A
47.7
(-1.6)
A
115.8
(3)
A
89
avr 49.9
(-3)
61.6
(0.5)
59.3
(-0.2)
69.8
(3)
20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 141.3
(-0.6)
P
103.8
(-3)
P
110.5
(-2.6)
P
168.7
(1.1)
P
198.5
(3)
P
120.1
(-2)
P
95
B 121.1
(-3)
P
141.1
(-1.1)
P
128.2
(-2.3)
P
167.3
(1.4)
P
184.6
(3)
P
160.9
(0.8)
P
64
C 85.8
(-3)
P
144.3
(-0.5)
P
90.9
(-2.8)
A
226.1
(3)
P
168
(0.5)
P
168.6
(0.5)
P
140
avr 116.1
(-2.5)
129.7
(-1.5)
109.9
(-3)
187.4
(3)
183.7
(2.7)
149.9
(0.1)
78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.6
(-3)
A
22.1
(3)
A
18.4
(0.7)
A
12.9
(-2.8)
A
10
B 20.1
(3)
A
13.8
(1)
A
13.8
(1)
A
1.2
(-3)
A
19
C 17.2
(1.8)
A
7.8
(-3)
A
16.6
(1.5)
A
19.5
(3)
A
12
avr 16.6
(3)
14.6
(0.8)
16.3
(2.7)
11.2
(-3)
5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 26.1
(-2.7)
P
36.9
(-0.9)
P
24.1
(-3)
P
42.8
(0.1)
P
59.9
(3)
P
29.2
(-2.1)
P
36
B 42.1
(-1.5)
P
47
(-0.8)
P
31.1
(-3)
P
44.3
(-1.2)
P
75
(3)
P
60
(0.9)
P
44
C 31.8
(-1.4)
P
44
(0.8)
P
23.1
(-3)
A
45.5
(1)
P
54.4
(2.6)
P
56.5
(3)
P
33
avr 33.3
(-1.8)
42.6
(-0.3)
26.1
(-3)
44.2
(-0.1)
63.1
(3)
48.6
(0.6)
37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13861
Sequence Type Exemplar sequence
Representative Public ID T26H5.8 NCBI
Target Description T26H5.8 /REP_DB=WormBase Gene ID /WP=CE20106 /TR=Q9XTI7 /GB=CAA21488.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074438(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_074438 NCBI Caenorhabditis elegans T26H5.8 (T26H5.8) mRNA, complete cds. 11/11 None
GENEFINDER00000040591 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15429891:15434118:-1 10/11 None
T26H5.8 ENSEMBL cdna:known chromosome:CEL140:V:15429891:15435152:-1 gene:T26H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15429890-15435152(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26H5.8
Entrez Gene 188959 Entrez gene
SwissProt Q9XTI7 EMBL-EBI
WormBase CE20106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21488 Hypothetical protein T26H5.8 [Caenorhabditis elegans] emb|CAB04857.1| Hypothetical protein T26H5.8 [Caenorhabditis elegans] ref|NP_506839.1| T26H5.8 [Caenorhabditis elegans] 0.0
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 1.0E-115
blast CAA21488 Hypothetical protein T26H5.8 [Caenorhabditis elegans] emb|CAB04857.1| Hypothetical protein T26H5.8 [Caenorhabditis elegans] ref|NP_506839.1| T26H5.8 [Caenorhabditis elegans] 9.0E-93
blast CAB03434 Hypothetical protein T26E4.4 [Caenorhabditis elegans] ref|NP_506936.1| T26E4.4 [Caenorhabditis elegans] 2.0E-86
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 5.0E-63
blast CAB03440 Hypothetical protein T26E4.5 [Caenorhabditis elegans] ref|NP_506935.1| T26E4.5 [Caenorhabditis elegans] 3.0E-58
Sequence
Target Sequence
>C. ELEGANS:178909_AT
ggagacttcgagaccgatgggcttcatcaaccatcggacccaacattcacacgcgctgcc
acagattttctggtggaaaagtatcaaaaaacacggagacatgtgactgttgtagtattt
ggtaatgatatgagttttgcgcacacagtctttgaaggtgagaaaagttttttttttttt
tgcaaaaaaacctatgaaattttgcatcgagtcggtaatatttcatttgccttaaaccca
aatgccactgcactaaactacactttaccggagtattcacccacatatgatgtaaggtcc
cgtaattttctcgcagcaactctaaaacattttcaggtaattttaaccccacaatctacg
ccagaaattgatctagcattttcaagaactttttgcgatgccacattgtttacgggacct
tcttcaacttttggatggtggctatcatatttagcaaaaagttcggcgaaggtttattat
agagacattctggaaacaaaagatggggtaatcaacgacatgaaggttgaagacttttac
ccgccagaatggat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GGAGACTTCGAGACCGATGGGCTTC 483 519 595 Antisense
GATGGGCTTCATCAACCATCGGACC 203 409 610 Antisense
CGCGCTGCCACAGATTTTCTGGTGG 629 255 646 Antisense
TGAGTTTTGCGCACACAGTCTTTGA 303 567 725 Antisense
GAGTCGGTAATATTTCATTTGCCTT 75 401 803 Antisense
ATGCCACTGCACTAAACTACACTTT 700 39 836 Antisense
TTTACCGGAGTATTCACCCACATAT 483 673 858 Antisense
TGTAAGGTCCCGTAATTTTCTCGCA 638 557 885 Antisense
AGAACTTTTTGCGATGCCACATTGT 130 73 979 Antisense
GCCACATTGTTTACGGGACCTTCTT 598 277 994 Antisense
AAGACTTTTACCCGCCAGAATGGAT 567 149 1124 Antisense
Sequence Source Affymetrix Proprietary Database