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[178908_at]

Description B0391.1 /REP_DB=WormBase Gene ID /WP=CE15553 /TR=O45222 /GB=CAA16285.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 7.8
(-0.4)
A 		3.7
(-3)
A 		4.1
(-2.7)
A 		13.2
(3)
A 		10
B 6
(-2.6)
A 		4.5
(-3)
A 		7.3
(-2.3)
A 		27.3
(3)
A 		23
C 7.7
(-2.2)
A 		14.2
(-0.6)
A 		4.6
(-3)
A 		28.7
(3)
A 		24
avr 7.2
(-2.4) 		7.5
(-2.3) 		5.3
(-3) 		23.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.3
(-3)
A 		5.2
(-1)
A 		5.6
(-0.1)
A 		7
(3)
A 		4.7
(-2.1)
A 		4.9
(-1.7)
A 		3
B 5
(-2.6)
A 		7.5
(-1.8)
A 		7.1
(-2)
A 		23.6
(3)
A 		3.6
(-3)
A 		7.4
(-1.9)
A 		20
C 2.7
(-3)
A 		7.7
(-2.2)
A 		39.5
(3)
A 		6.9
(-2.3)
A 		3.2
(-2.9)
A 		12
(-1.5)
A 		37
avr 4
(-2.9) 		6.8
(-1.7) 		17.4
(3) 		12.5
(0.8) 		3.8
(-3) 		8.1
(-1.1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.8
(3)
A 		0.8
(-3)
A 		1.1
(-2.1)
A 		1.9
(0.3)
A 		2
B 1.9
(-2)
A 		1.1
(-3)
A 		1.7
(-2.2)
A 		5.8
(3)
A 		5
C 2.6
(-1.1)
A 		4.1
(1.7)
A 		1.6
(-3)
A 		4.8
(3)
A 		3
avr 2.4
(-1) 		2
(-1.9) 		1.5
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.8
(3)
A 		1.2
(-0.6)
A 		1.8
(3)
A 		1.4
(0.6)
A 		1.2
(-0.6)
A 		1
B 1.7
(-2.8)
A 		2.5
(-1.8)
A 		1.7
(-2.8)
A 		6.3
(3)
A 		1.5
(-3)
A 		2.7
(-1.5)
A 		5
C 1
(-3)
A 		2.3
(-2.1)
A 		10.1
(3)
A 		1.4
(-2.7)
A 		1
(-3)
A 		4
(-1)
A 		9
avr 1.2
(-3) 		2.2
(-1.1) 		4.3
(3) 		3.2
(0.9) 		1.3
(-2.8) 		2.6
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13496
Sequence Type Exemplar sequence
Representative Public ID B0391.1 NCBI
Target Description B0391.1 /REP_DB=WormBase Gene ID /WP=CE15553 /TR=O45222 /GB=CAA16285.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0391.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15620761:15621976:-1 gene:B0391.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015406 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15620760-15621976(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0391.1
Sequence
Target Sequence 
>C. ELEGANS:178908_AT
aatgtttgtcattgtctttgcctaccgatccttcgtcgcaaccggaaacaagattctcaa
aaaattcaaaaacttcgaaatcgtgacctggtttgcattgccctttgcctacggagtagc
ctatgcactgggtacttattttctgtatcccaattctccagaaatggatgttcttgctgg
agaattcatgcgtaatgagaagaatttgtcgttggacgagttttcctacacagggccctt
attttactcaccagttgacggatcgttgattcacaaatctcttgcagctgcatctgtctt
gtgcgtgcttacgacaatatcctttatccttatcgtatatttcggtatccagtgttactc
ttacatatcaaaaatctctcaaatcgccacaacaaaatcaaacaaggtgaaaaggttaca
gcagcagttgtttgctgctttagttctccaggtacctggaagatctcacaagcacctccg
atcaaatttccaggctctggtcccactcatcctgatgcacattccattttgcattcttta
cacgctatgcctcttgaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTTGTCATTGTCTTTGCCTAC 33 165 267 Antisense
AATCGTGACCTGGTTTGCATTGCCC 226 169 345 Antisense
TACACAGGGCCCTTATTTTACTCAC 451 639 493 Antisense
AAATCTCTTGCAGCTGCATCTGTCT 79 117 541 Antisense
CATCTGTCTTGTGCGTGCTTACGAC 214 211 557 Antisense
GACAATATCCTTTATCCTTATCGTA 609 363 579 Antisense
CAAAAATCTCTCAAATCGCCACAAC 483 191 635 Antisense
AGTTGTTTGCTGCTTTAGTTCTCCA 652 63 692 Antisense
ACCTGGAAGATCTCACAAGCACCTC 273 89 720 Antisense
GCACCTCCGATCAAATTTCCAGGCT 86 315 738 Antisense
TTTACACGCTATGCCTCTTGAAAGT 436 673 803 Antisense
Sequence Source Affymetrix Proprietary Database