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[178907_at]

Description K04C1.1 /REP_DB=WormBase Gene ID /WP=CE06085 /TR=Q21203 /GB=CAA94211.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 15      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 38.3
(-2.8)
P 		45.9
(-1.8)
A 		37.2
(-3)
A 		79
(3)
A 		42
B 65.9
(3)
P 		11.9
(-3)
A 		40.9
(0.2)
P 		24.9
(-1.6)
P 		54
C 52.7
(3)
P 		7.4
(-3)
A 		8.8
(-2.8)
A 		41.4
(1.5)
A 		45
avr 52.3
(3) 		21.7
(-3) 		29
(-1.6) 		48.4
(2.2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 39.3
(-0.2)
A 		33.5
(-1.6)
P 		53.6
(3)
P 		38.5
(-0.4)
P 		27.1
(-3)
A 		33.3
(-1.6)
A 		27
B 21.7
(-1.6)
A 		53.1
(3)
P 		12.6
(-2.9)
A 		41.2
(1.3)
P 		36.6
(0.6)
A 		11.7
(-3)
A 		41
C 18.4
(-3)
A 		51.4
(-0)
A 		40.2
(-1)
P 		84.5
(3)
M 		35.2
(-1.5)
P 		25.1
(-2.4)
A 		66
avr 26.5
(-2.4) 		46
(1.3) 		35.5
(-0.7) 		54.7
(3) 		33
(-1.2) 		23.4
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.9
(3)
P 		10
(-2.6)
A 		9.7
(-3)
A 		11.6
(-0.3)
A 		4
B 21
(3)
P 		2.9
(-3)
A 		9.5
(-0.8)
P 		5.3
(-2.2)
P 		18
C 17.4
(3)
P 		2.1
(-3)
A 		3.1
(-2.6)
A 		7
(-1.1)
A 		15
avr 17.4
(3) 		5
(-3) 		7.4
(-1.8) 		8
(-1.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.2
(-3)
A 		11.9
(3)
P 		11.7
(2.7)
P 		9.8
(0.3)
P 		8.2
(-1.7)
A 		8.1
(-1.9)
A 		5
B 7.5
(-1.2)
A 		17.7
(3)
P 		3.1
(-3)
A 		10.9
(0.2)
P 		14.9
(1.8)
A 		4.4
(-2.5)
A 		15
C 6.8
(-3)
A 		15.7
(2.2)
A 		10.2
(-1)
P 		17
(3)
M 		11.4
(-0.3)
P 		8.4
(-2.1)
A 		10
avr 7.2
(-2.9) 		15.1
(3) 		8.3
(-2) 		12.6
(1.1) 		11.5
(0.3) 		7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17585
Sequence Type Exemplar sequence
Representative Public ID K04C1.1 NCBI
Target Description K04C1.1 /REP_DB=WormBase Gene ID /WP=CE06085 /TR=Q21203 /GB=CAA94211.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077970 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-37) (srg-37) mRNA, complete cds. 11/11 None
GENEFINDER00000041366 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14233864:14234727:-1 11/11 None
K04C1.1 ENSEMBL cdna:known chromosome:CEL140:X:14233864:14235205:-1 gene:K04C1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041358 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14233863-14235205(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-37
Ensembl K04C1.1
Entrez Gene 186978 Entrez gene
SwissProt Q21203 EMBL-EBI
WormBase CE06085 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94211 Hypothetical protein K04C1.1 [Caenorhabditis elegans] ref|NP_510371.1| Serpentine Receptor, class G (gamma) family member (srg-37) [Caenorhabditis elegans] 1.0E-168
blast CAA94211 Hypothetical protein K04C1.1 [Caenorhabditis elegans] ref|NP_510371.1| Serpentine Receptor, class G (gamma) family member (srg-37) [Caenorhabditis elegans] 1.0E-116
blast CAA94216 Hypothetical protein K04C1.6 [Caenorhabditis elegans] emb|CAB04583.1| Hypothetical protein K04C1.6 [Caenorhabditis elegans] ref|NP_510370.1| Serpentine Receptor, class G (gamma) family member (srg-36) [Caenorhabditis elegans] 3.0E-66
blast CAA16409 Hypothetical protein Y51A2D.12 [Caenorhabditis elegans] ref|NP_507631.1| Serpentine Receptor, class G (gamma) family member (srg-34) [Caenorhabditis elegans] 6.0E-58
blast CAA94216 Hypothetical protein K04C1.6 [Caenorhabditis elegans] emb|CAB04583.1| Hypothetical protein K04C1.6 [Caenorhabditis elegans] ref|NP_510370.1| Serpentine Receptor, class G (gamma) family member (srg-36) [Caenorhabditis elegans] 1.0E-38
blast CAA16409 Hypothetical protein Y51A2D.12 [Caenorhabditis elegans] ref|NP_507631.1| Serpentine Receptor, class G (gamma) family member (srg-34) [Caenorhabditis elegans] 1.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510371.1 4 10-32,41-63,163-182,203-225
K04C1.1 4 10-32,41-63,163-182,203-225
GENEFINDER00000041366 3 7-26,75-94,115-137
Sequence
Target Sequence 
>C. ELEGANS:178907_AT
gatctcttacaatcgattctgcgcaatcactagtctacttgatattgagaaaagatggaa
acccggcctgatttttttcaatcgttcatactacacatatgtgagctcaaaggacaattt
ctacataagctcaacgctgggacataaagcaatctatggattccttgctccaaatctatt
tatcattacaatttttaacaccgttctgaacatcaaggcatataaaaaactgcttgtatt
gaaaaaaacattgagaagtgttccggacacaaatttattttatatgtcgcttgctatgtt
tggcattgactcttttctagcagttttatccacatttaaagcgataatttttctgttgga
gctgaaaaactcttctgaatttttcgaacgtttagtggactggatagatttactggttcc
gtttgctagtgacgcactaactctgactcagccgcttcttttgctgtatttcagtagcac
tcttcgtcaaaagtgcatcgaacgtttaccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCTTACAATCGATTCTGCGCA 539 419 351 Antisense
ATTCTGCGCAATCACTAGTCTACTT 297 9 366 Antisense
GAAAAGATGGAAACCCGGCCTGATT 156 351 399 Antisense
ATGGATTCCTTGCTCCAAATCTATT 443 49 506 Antisense
TATGTCGCTTGCTATGTTTGGCATT 57 657 633 Antisense
GTTTGGCATTGACTCTTTTCTAGCA 219 453 648 Antisense
ACTGGTTCCGTTTGCTAGTGACGCA 683 95 762 Antisense
TAGTGACGCACTAACTCTGACTCAG 532 653 777 Antisense
ACTCAGCCGCTTCTTTTGCTGTATT 224 101 796 Antisense
GTATTTCAGTAGCACTCTTCGTCAA 561 451 816 Antisense
CAAAAGTGCATCGAACGTTTACCCT 267 191 838 Antisense
Sequence Source Affymetrix Proprietary Database