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[178906_at]

Description R07A4.3 /REP_DB=WormBase Gene ID /WP=CE03532 /TR=Q21781 /GB=CAA91763.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      4grp_high_8_8 > 43      6grp_highest_nonorm > 52      6grp_total > 62      4grp_total > 52      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 314.5
(-2.1)
P 		456.9
(3)
P 		355.2
(-0.6)
P 		289.1
(-3)
M 		168
B 411.5
(3)
P 		313.9
(-0.5)
P 		318.8
(-0.3)
P 		244.7
(-3)
P 		167
C 456.5
(3)
P 		397.4
(1.5)
P 		333.1
(-0.1)
P 		220.8
(-3)
P 		236
avr 394.2
(3) 		389.4
(2.8) 		335.7
(0.5) 		251.5
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1255
1 2 3 4 5 6 range
A 351
(-1.5)
P 		541.9
(-0)
P 		933.2
(2.9)
P 		941.7
(3)
P 		455.9
(-0.7)
P 		154
(-3)
P 		788
B 274.2
(-2.4)
P 		486.5
(-1.3)
P 		1318
(3)
P 		946.6
(1.1)
P 		484.6
(-1.3)
P 		153.2
(-3)
P 		1165
C 322
(-2.3)
P 		487
(-1.5)
P 		1408.2
(3)
P 		861.5
(0.4)
P 		463.1
(-1.6)
P 		170.3
(-3)
P 		1238
avr 315.7
(-2.1) 		505.1
(-1) 		1219.8
(3) 		916.6
(1.3) 		467.9
(-1.3) 		159.2
(-3) 		1061
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 114.5
(3)
P 		99.2
(1.7)
P 		92.9
(1.2)
P 		42.3
(-3)
M 		72
B 131.2
(3)
P 		77.5
(-1.1)
P 		73.9
(-1.3)
P 		52.1
(-3)
P 		79
C 151.1
(3)
P 		114.3
(1.1)
P 		116.1
(1.2)
P 		37.2
(-3)
P 		114
avr 132.3
(3) 		97
(0.6) 		94.3
(0.4) 		43.9
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 64.7
(-2.2)
P 		192.7
(1.6)
P 		203.2
(1.9)
P 		238.8
(3)
P 		137.6
(-0)
P 		37.5
(-3)
P 		201
B 95.4
(-2.1)
P 		161.9
(-0.6)
P 		320.1
(3)
P 		250.7
(1.4)
P 		196.9
(0.2)
P 		57.1
(-3)
P 		263
C 119.3
(-1.8)
P 		148.6
(-1.2)
P 		358.4
(3)
P 		173.3
(-0.7)
P 		149.8
(-1.2)
P 		57
(-3)
P 		301
avr 93.1
(-1.9) 		167.7
(-0.1) 		293.9
(3) 		220.9
(1.2) 		161.4
(-0.3) 		50.5
(-3) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17187
Sequence Type Exemplar sequence
Representative Public ID R07A4.3 NCBI
Target Description R07A4.3 /REP_DB=WormBase Gene ID /WP=CE03532 /TR=Q21781 /GB=CAA91763.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077397 NCBI Caenorhabditis elegans R07A4.3 (R07A4.3) mRNA, complete cds. 11/11 None
R07A4.3 ENSEMBL cdna:known chromosome:CEL140:X:10754840:10758090:1 gene:R07A4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10754839-10758090(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07A4.3
Entrez Gene 181270 Entrez gene
SwissProt Q21781 EMBL-EBI
WormBase CE03532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91763 Hypothetical protein R07A4.3 [Caenorhabditis elegans] ref|NP_509798.1| R07A4.3 [Caenorhabditis elegans] 1.0E-145
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509798.1 1 253-275
R07A4.3 1 253-275
Sequence
Target Sequence 
>C. ELEGANS:178906_AT
taaacagcatcgaattgtctcctccacagccacttaaaccaactgtgatcagaccgatcg
ccgtgaatggaacggcatgtattggaaaaccgttgatgcccaatcaacaactacttccaa
tgccttctacgacgttgtcagggtctccgcataacacccaatttccatttccaaattacc
ctcacctacctggatatggatggccatttccaccgtttgtgaatccattcatgccatatg
ttctttcacccctccagttatctctacttcaaaatcagttaggcatcaactcgctaacaa
caaggacatctgcacaacaaccaaaccttgacaattctaataagcgaaaagcgaccagtc
cgttacccgtggatactagaagcaagcgggtaaaagaaatagaaaaggatgtgtaccaaa
tgaaccttcaccaaacaacacaacctcaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACAGCATCGAATTGTCTCCTCC 215 641 296 Antisense
AACTGTGATCAGACCGATCGCCGTG 473 143 336 Antisense
AATCAACAACTACTTCCAATGCCTT 537 171 397 Antisense
ATGCCTTCTACGACGTTGTCAGGGT 704 39 415 Antisense
TTGTCAGGGTCTCCGCATAACACCC 410 697 430 Antisense
TACCCTCACCTACCTGGATATGGAT 508 649 472 Antisense
GGCCATTTCCACCGTTTGTGAATCC 163 543 497 Antisense
ATTCATGCCATATGTTCTTTCACCC 692 11 522 Antisense
GGCATCAACTCGCTAACAACAAGGA 49 509 577 Antisense
CAGTCCGTTACCCGTGGATACTAGA 373 205 651 Antisense
TCACCAAACAACACAACCTCAGGCA 621 625 723 Antisense
Sequence Source Affymetrix Proprietary Database