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[178905_s_at]

Description C37A5.7 /REP_DB=WormBase Gene ID /WP=CE17531 /TR=O62096 /GB=CAB07338.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 65.2
(3)
A 		43.4
(0)
A 		20.9
(-3)
A 		62.3
(2.6)
A 		44
B 62.6
(-0.3)
A 		30.6
(-3)
A 		45.1
(-1.8)
A 		102.9
(3)
A 		72
C 30
(-3)
A 		30.7
(-3)
A 		38
(-2.5)
A 		128.2
(3)
P 		98
avr 52.6
(-1.3) 		34.9
(-3) 		34.7
(-3) 		97.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 40.8
(-0.6)
A 		51.7
(0.1)
A 		2.7
(-3)
A 		40.5
(-0.6)
A 		69.7
(1.3)
P 		96.2
(3)
P 		94
B 31.9
(-3)
A 		53.6
(-0.9)
A 		42.4
(-2)
A 		39
(-2.3)
A 		90.9
(2.6)
P 		94.8
(3)
P 		63
C 72.4
(3)
A 		44.6
(-0.3)
A 		36.1
(-1.3)
A 		21.4
(-3)
A 		45.4
(-0.2)
P 		69.7
(2.7)
P 		51
avr 48.4
(-0.9) 		50
(-0.7) 		27.1
(-3) 		33.6
(-2.3) 		68.7
(1.2) 		86.9
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 23.7
(3)
A 		9.4
(-1.7)
A 		5.5
(-3)
A 		9.1
(-1.8)
A 		18
B 20
(2.2)
A 		7.6
(-3)
A 		10.4
(-1.8)
A 		21.9
(3)
A 		14
C 9.9
(-2.5)
A 		8.8
(-3)
A 		13.2
(-0.9)
A 		21.6
(3)
P 		13
avr 17.9
(3) 		8.6
(-3) 		9.7
(-2.3) 		17.5
(2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7.5
(-1.2)
A 		18.4
(1.7)
A 		0.6
(-3)
A 		10.3
(-0.4)
A 		21
(2.4)
P 		23.4
(3)
P 		23
B 11.1
(-2.8)
A 		17.8
(-1.3)
A 		10.3
(-3)
A 		10.3
(-3)
A 		36.9
(3)
P 		35.4
(2.7)
P 		27
C 26.8
(3)
A 		13.6
(-0.5)
A 		9.2
(-1.7)
A 		4.3
(-3)
A 		14.7
(-0.2)
P 		23.3
(2.1)
P 		23
avr 15.1
(-0.6) 		16.6
(-0.1) 		6.7
(-3) 		8.3
(-2.5) 		24.2
(2.1) 		27.4
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178905_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1067
Sequence Type Exemplar sequence
Representative Public ID C37A5.7 NCBI
Target Description C37A5.7 /REP_DB=WormBase Gene ID /WP=CE17531 /TR=O62096 /GB=CAB07338.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061072 NCBI Caenorhabditis elegans C37A5.7 (C37A5.7) mRNA, complete cds. 11/11 None
GENEFINDER00000011865 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14171134:14180904:1 9/11 None
C37A5.7.2 ENSEMBL cdna:known chromosome:CEL140:I:14171565:14176415:1 gene:C37A5.7 11/11 None
C37A5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:14171648:14176415:1 gene:C37A5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011862 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14171465-14176108(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37A5.7
Entrez Gene 173286 Entrez gene
SwissProt O62096 EMBL-EBI
WormBase CE37488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07338 Hypothetical protein C37A5.7 [Caenorhabditis elegans] ref|NP_493473.2| C37A5.7 [Caenorhabditis elegans] 0.0
blast CAB07338 Hypothetical protein C37A5.7 [Caenorhabditis elegans] ref|NP_493473.2| C37A5.7 [Caenorhabditis elegans] 1.0E-149
blast CAE71794 Hypothetical protein CBG18804 [Caenorhabditis briggsae] 1.0E-129
blast CAE71794 Hypothetical protein CBG18804 [Caenorhabditis briggsae] 3.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011865 1 412-434
Sequence
Target Sequence 
>C. ELEGANS:178905_S_AT
tatcaagccgatcagcagctggtggatattgctaaaagaaatctcctattccagtacggt
cctccatcgaaaatcggaaatttccgacgacatccatttgcgccggtgatcacttcgcgg
aggatcgattctgttgagaaaaaggaaaatctgctctacatctccccgaaagccaccaaa
ttcctcccggactccgtccccgagcacgttaaaggcgttgtaatttgcctttccaatgat
gcttcaccatcaacgagtagccaaagcgcttgtatcgctgataaggtgacaccctatcag
ctgccctttaaacgggtcattagatcagaacgcttccggccatattcagtgcacctgtgg
caattggcgcggatttttcggcaatatttcgatggagccacaatagatgaggcgattttg
agcaatacggaaaatcttctgggaagaagaagcgaaagtcagaggagtagcgggaaggag
tacgaggagaaggatgaggtgtttcgatcgtcaatgtatcacatcaacaactgttcgaat
gggctcacggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAAGCCGATCAGCAGCTGGTGG 237 657 739 Antisense
CCGGTGATCACTTCGCGGAGGATCG 328 265 841 Antisense
GTCCCCGAGCACGTTAAAGGCGTTG 73 475 934 Antisense
TTTGCCTTTCCAATGATGCTTCACC 487 669 962 Antisense
ATGCTTCACCATCAACGAGTAGCCA 410 43 977 Antisense
GATAAGGTGACACCCTATCAGCTGC 431 423 1018 Antisense
ATCAGCTGCCCTTTAAACGGGTCAT 681 27 1034 Antisense
TCAGTGCACCTGTGGCAATTGGCGC 210 623 1084 Antisense
GCAATTGGCGCGGATTTTTCGGCAA 5 323 1098 Antisense
GAGGTGTTTCGATCGTCAATGTATC 97 403 1234 Antisense
AACTGTTCGAATGGGCTCACGGAGC 135 141 1267 Antisense
Sequence Source Affymetrix Proprietary Database