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[178904_s_at]

Description T08G5.8 /REP_DB=WormBase Gene ID /WP=CE18948 /TR=Q9XUQ3 /GB=CAB04721.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 3.1
(-3)
A 		8.2
(-2.1)
A 		8
(-2.1)
A 		35.6
(3)
A 		33
B 9.8
(-1.9)
A 		7.4
(-2.3)
A 		3.7
(-3)
A 		36.1
(3)
A 		32
C 3.4
(-2.6)
A 		3.6
(-2.5)
A 		1.4
(-3)
A 		28.6
(3)
A 		27
avr 5.4
(-2.8) 		6.4
(-2.6) 		4.4
(-3) 		33.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 5.9
(-1.5)
A 		3.4
(-3)
A 		5.6
(-1.7)
A 		3.5
(-2.9)
A 		11.6
(2)
A 		13.3
(3)
A 		10
B 2.1
(-2.7)
A 		28.7
(3)
A 		6.8
(-1.7)
A 		11.7
(-0.7)
A 		2.4
(-2.7)
A 		0.8
(-3)
A 		28
C 4.3
(0.6)
A 		2.8
(-2.1)
A 		2.9
(-1.9)
A 		5.6
(3)
A 		2.3
(-3)
A 		2.4
(-2.8)
A 		3
avr 4.1
(-3) 		11.6
(3) 		5.1
(-2.2) 		6.9
(-0.8) 		5.4
(-2) 		5.5
(-1.9) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-3)
A 		1.8
(-2)
A 		2.1
(-1.5)
A 		5.2
(3)
A 		4
B 3.1
(-1)
A 		1.8
(-2.1)
A 		0.8
(-3)
A 		7.7
(3)
A 		7
C 1.1
(-2.2)
A 		1
(-2.3)
A 		0.5
(-3)
A 		4.8
(3)
A 		4
avr 1.8
(-2.1) 		1.5
(-2.5) 		1.1
(-3) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		1.2
(-2.3)
A 		1.2
(-2.3)
A 		0.9
(-3)
A 		3.5
(3)
A 		3.2
(2.3)
A 		3
B 0.7
(-2.7)
A 		9.6
(3)
A 		1.7
(-2.1)
A 		3.1
(-1.2)
A 		1
(-2.5)
A 		0.3
(-3)
A 		9
C 1.6
(3)
A 		0.9
(-1.7)
A 		0.7
(-3)
A 		1.1
(-0.3)
A 		0.8
(-2.3)
A 		0.8
(-2.3)
A 		1
avr 1.1
(-3) 		3.9
(3) 		1.2
(-2.8) 		1.7
(-1.7) 		1.8
(-1.5) 		1.4
(-2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13949
Sequence Type Exemplar sequence
Representative Public ID T08G5.8 NCBI
Target Description T08G5.8 /REP_DB=WormBase Gene ID /WP=CE18948 /TR=Q9XUQ3 /GB=CAB04721.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074088(11), NM_074087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074088 NCBI Caenorhabditis elegans T08G5.8 (T08G5.8) mRNA, complete cds. 11/11 None
NM_074087 NCBI Caenorhabditis elegans T08G5.9 (T08G5.9) mRNA, complete cds. 11/11 None
SNAP00000009117 ENSEMBL cdna:SNAP chromosome:CEL140:V:14048195:14048909:-1 9/11 None
T08G5.9 ENSEMBL cdna:known chromosome:CEL140:V:14048034:14048909:-1 gene:T08G5.9 11/11 None
T08G5.8 ENSEMBL cdna:known chromosome:CEL140:V:14050232:14051176:1 gene:T08G5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075276 1/11 Cross Hyb Matching Probes None
SNAP00000009118 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009128 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009129 7/11 Cross Hyb Matching Probes None
GENEFINDER00000040265 1/11 Cross Hyb Matching Probes None
C54E10.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14050231-14051176(+) 85.86 100.0
chrV:14048033-14048862(-) 84.95 84.95
Public Domain and Genome References
Gene Title

Ensembl T08G5.9
T08G5.8
Entrez Gene 188305 Entrez gene
188306 Entrez gene
SwissProt Q9XUQ3 EMBL-EBI
Q9XUQ2 EMBL-EBI
WormBase CE18948 Wormbase
CE18949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04721 Hypothetical protein T08G5.8 [Caenorhabditis elegans] ref|NP_506489.1| T08G5.8 [Caenorhabditis elegans] 1.0E-120
blast CAB04722 Hypothetical protein T08G5.9 [Caenorhabditis elegans] ref|NP_506488.1| T08G5.9 [Caenorhabditis elegans] 1.0E-105
blast CAB04722 Hypothetical protein T08G5.9 [Caenorhabditis elegans] ref|NP_506488.1| T08G5.9 [Caenorhabditis elegans] 1.0E-103
blast CAB04721 Hypothetical protein T08G5.8 [Caenorhabditis elegans] ref|NP_506489.1| T08G5.8 [Caenorhabditis elegans] 1.0E-102
blast CAB04722 Hypothetical protein T08G5.9 [Caenorhabditis elegans] ref|NP_506488.1| T08G5.9 [Caenorhabditis elegans] 2.0E-99
blast CAB04721 Hypothetical protein T08G5.8 [Caenorhabditis elegans] ref|NP_506489.1| T08G5.8 [Caenorhabditis elegans] 8.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.9E-4
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:178904_S_AT
tccctccttgggatgcatacaagtccggcaaattcttctatgtcgcaggcgatatattcc
aatgatagtctcaccacgactgatggagtgcttggagatgaatctctcagtagtgaaacc
agcattgtcagcttcaccggtgaaaatgcaaacaagcaaaagagacaacgtctatcggaa
tcaactgaaaatagtattcctgagcctgcttttttaagaagcaatgtaacatctttgaca
acaagcgaatcagatgatattcaacagtttttccttgaaaacgagtcgctattccaaatt
gaatacaaaattgattacaaaaactacagagactacactattgtgccctctttcggaact
gttataccgaagagtaaatgcgaaatcgctttgatttgtcgacctaccggaaagtctgaa
tcagatcaaatgactatctcttacaaaacagtggatagtgataatgacttggccaacgga
tgtttttcagagatggaaaaaatagttattgatattaaaggaagatcacaggaatcacca
attcactcaataccatcatcgtctggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCCTTGGGATGCATACAAGTC 481 597 154 Antisense
AGTCCGGCAAATTCTTCTATGTCGC 366 61 175 Antisense
TGTCGCAGGCGATATATTCCAATGA 506 557 194 Antisense
TATTCCAATGATAGTCTCACCACGA 562 663 208 Antisense
GTCTCACCACGACTGATGGAGTGCT 611 469 221 Antisense
GACAACGTCTATCGGAATCAACTGA 485 365 317 Antisense
AAATAGTATTCCTGAGCCTGCTTTT 343 117 342 Antisense
ATCAAATGACTATCTCTTACAAAAC 556 25 578 Antisense
CTTGGCCAACGGATGTTTTTCAGAG 228 213 621 Antisense
AATCACCAATTCACTCAATACCATC 686 169 686 Antisense
CACTCAATACCATCATCGTCTGGCT 89 197 697 Antisense
Sequence Source Affymetrix Proprietary Database