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[178903_at]

Description R11A5.6 /REP_DB=WormBase Gene ID /WP=CE12732 /TR=O45716 /GB=CAB05596.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 01      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 37.4
(-2)
A 		22
(-3)
A 		42.2
(-1.7)
A 		117.7
(3)
A 		96
B 10.2
(-3)
A 		19.7
(-2.1)
A 		18.6
(-2.2)
A 		74.4
(3)
A 		64
C 42.9
(-1.5)
A 		11.9
(-3)
A 		26.9
(-2.3)
A 		135.6
(3)
A 		124
avr 30.2
(-2.2) 		17.9
(-3) 		29.2
(-2.3) 		109.2
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 69.6
(3)
A 		7.2
(-2.6)
A 		45.1
(0.8)
A 		4.2
(-2.9)
A 		23.9
(-1.1)
A 		3.3
(-3)
A 		66
B 29.7
(0.6)
A 		22.6
(-0.5)
A 		45.9
(3)
A 		12.8
(-2)
A 		6.1
(-3)
A 		39.9
(2.1)
A 		40
C 19
(-1.6)
A 		55.4
(3)
A 		7.8
(-3)
A 		37
(0.7)
A 		13.6
(-2.3)
A 		10.4
(-2.7)
A 		48
avr 39.4
(3) 		28.4
(0.3) 		32.9
(1.4) 		18
(-2.2) 		14.5
(-3) 		17.9
(-2.2) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.6
(1.3)
A 		4.8
(-3)
A 		11
(0)
A 		17.2
(3)
A 		12
B 3.3
(-3)
A 		4.9
(-2.2)
A 		4.3
(-2.5)
A 		15.8
(3)
A 		13
C 14.2
(0.3)
A 		3.4
(-3)
A 		9.4
(-1.2)
A 		22.9
(3)
A 		20
avr 10.4
(-0.5) 		4.4
(-3) 		8.2
(-1.4) 		18.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.8
(3)
A 		2.5
(-2.2)
A 		9.8
(1.5)
A 		1.1
(-2.9)
A 		7.2
(0.2)
A 		0.8
(-3)
A 		12
B 10.3
(0.8)
A 		7.5
(-0.6)
A 		11.2
(1.2)
A 		3.4
(-2.6)
A 		2.5
(-3)
A 		14.9
(3)
A 		12
C 7
(-1)
A 		16.9
(3)
A 		2
(-3)
A 		7.4
(-0.8)
A 		4.4
(-2)
A 		3.5
(-2.4)
A 		15
avr 10
(3) 		9
(2) 		7.7
(0.7) 		4
(-3) 		4.7
(-2.3) 		6.4
(-0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2408
Sequence Type Exemplar sequence
Representative Public ID R11A5.6 NCBI
Target Description R11A5.6 /REP_DB=WormBase Gene ID /WP=CE12732 /TR=O45716 /GB=CAB05596.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059774 NCBI Caenorhabditis elegans R11A5.6 (R11A5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037591 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7875673:7876681:-1 10/11 None
R11A5.6 ENSEMBL cdna:known chromosome:CEL140:I:7875703:7876044:-1 gene:R11A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7875633-7875975(-) 97.37 100.0
Public Domain and Genome References
Gene Title
Ensembl R11A5.6
Entrez Gene 187797 Entrez gene
SwissProt O45716 EMBL-EBI
WormBase CE12732 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05596 Hypothetical protein R11A5.6 [Caenorhabditis elegans] ref|NP_492175.1| R11A5.6 [Caenorhabditis elegans] 5.0E-60
blast CAB05596 Hypothetical protein R11A5.6 [Caenorhabditis elegans] ref|NP_492175.1| R11A5.6 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.5E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037591 3 7-29,39-61,68-90
Sequence
Target Sequence 
>C. ELEGANS:178903_AT
atgtatttctcttggttatttttagtttttttttcatctcgttctctcacaggcactcct
agatcgattgaccagaggcagttacgggccgagttgtcagggacagggacaccaactgct
ccagccgactccccggcacttgtgccgaattgcacgcagacacggggaggagaagatgga
gaaggttgcaaacaaccacgtgtagatatcaagaagtttcgaaaaaagaagggagctcat
aagccacaagagcctgagactttgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATTTCTCTTGGTTATTTTTAG 593 47 13 Antisense
TCTCTCACAGGCACTCCTAGATCGA 124 613 55 Antisense
GCACTCCTAGATCGATTGACCAGAG 534 307 65 Antisense
GACCAGAGGCAGTTACGGGCCGAGT 396 383 82 Antisense
GTTACGGGCCGAGTTGTCAGGGACA 365 439 93 Antisense
TCAGGGACAGGGACACCAACTGCTC 572 623 109 Antisense
ACTCCCCGGCACTTGTGCCGAATTG 603 99 140 Antisense
GAATTGCACGCAGACACGGGGAGGA 518 441 159 Antisense
GTTGCAAACAACCACGTGTAGATAT 314 439 197 Antisense
GAAGGGAGCTCATAAGCCACAAGAG 403 335 240 Antisense
GCCACAAGAGCCTGAGACTTTGAAC 494 277 255 Antisense
Sequence Source Affymetrix Proprietary Database