[Home] | [Total List]

[178902_at]

Description T02G6.1 /REP_DB=WormBase Gene ID /WP=CE18172 /TR=O62356 /GB=CAB04671.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 37.2
(0.4)
A 		54.9
(3)
A 		13.9
(-3)
A 		41.2
(1)
A 		41
B 41.3
(0.5)
A 		14.1
(-3)
A 		60.1
(3)
A 		22.4
(-1.9)
A 		46
C 52.4
(0.4)
A 		23.9
(-3)
A 		73.6
(3)
A 		65.3
(2)
A 		50
avr 43.6
(1.2) 		31
(-3) 		49.2
(3) 		43
(1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 14.7
(-0.4)
A 		26.2
(2.6)
A 		9.6
(-1.7)
A 		27.7
(3)
A 		10.4
(-1.5)
A 		4.8
(-3)
A 		23
B 25.1
(-1.7)
A 		14.3
(-2.7)
A 		79.3
(3)
A 		10.5
(-3)
A 		12.5
(-2.8)
A 		22.9
(-1.9)
A 		69
C 22.6
(-1.7)
A 		62.3
(3)
A 		15
(-2.6)
A 		13.8
(-2.7)
A 		29.4
(-0.9)
A 		11.4
(-3)
A 		51
avr 20.8
(-0.8) 		34.3
(2.9) 		34.6
(3) 		17.3
(-1.8) 		17.4
(-1.8) 		13
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.6
(3)
A 		11.9
(2)
A 		3.6
(-3)
A 		6
(-1.6)
A 		10
B 13.2
(2.6)
A 		3.5
(-3)
A 		13.9
(3)
A 		4.8
(-2.3)
A 		10
C 17.4
(0.4)
A 		6.9
(-3)
A 		25.6
(3)
A 		11
(-1.7)
A 		19
avr 14.7
(3) 		7.4
(-2.9) 		14.4
(2.8) 		7.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.7
(-1.9)
A 		9.3
(3)
A 		2.1
(-2.3)
A 		7
(1.3)
A 		3.1
(-1.6)
A 		1.2
(-3)
A 		8
B 8.7
(-0.8)
A 		4.8
(-2.3)
A 		19.2
(3)
A 		2.8
(-3)
A 		5.1
(-2.2)
A 		8.6
(-0.9)
A 		16
C 8.4
(-0.9)
A 		19
(3)
A 		3.8
(-2.6)
A 		2.8
(-3)
A 		9.5
(-0.5)
A 		3.8
(-2.6)
A 		16
avr 6.6
(-0.9) 		11
(3) 		8.4
(0.7) 		4.2
(-3) 		5.9
(-1.5) 		4.5
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1695
Sequence Type Exemplar sequence
Representative Public ID T02G6.1 NCBI
Target Description T02G6.1 /REP_DB=WormBase Gene ID /WP=CE18172 /TR=O62356 /GB=CAB04671.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060598 NCBI Caenorhabditis elegans T02G6.1 (T02G6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000017975 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11803573:11806054:-1 9/11 None
T02G6.1 ENSEMBL cdna:known chromosome:CEL140:I:11804025:11806889:-1 gene:T02G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11803955-11806820(-) 98.01 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G6.1
Entrez Gene 187996 Entrez gene
SwissProt O62356 EMBL-EBI
WormBase CE18172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04671 Hypothetical protein T02G6.1 [Caenorhabditis elegans] ref|NP_492999.1| T02G6.1 [Caenorhabditis elegans] 1.0E-134
blast CAE69593 Hypothetical protein CBG15816 [Caenorhabditis briggsae] 7.0E-64
blast CAB04671 Hypothetical protein T02G6.1 [Caenorhabditis elegans] ref|NP_492999.1| T02G6.1 [Caenorhabditis elegans] 2.0E-52
blast CAE69593 Hypothetical protein CBG15816 [Caenorhabditis briggsae] 1.0E-37
blast CAE69636 Hypothetical protein CBG15877 [Caenorhabditis briggsae] 1.0E-12
blast CAE69636 Hypothetical protein CBG15877 [Caenorhabditis briggsae] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:178902_AT
gcttattctctgttttttgttctcaaaatatatatttttattttgaaatcctaaaaaaaa
agttatccagcccaatcagtgcgacccgtactgcatccacctatcagtttcactacgtga
cacgtcgtgtgagcagcaccggagcccgtcatactactgtagagctcgagcattcgtctc
gagaccttggagccgcgcagcaagaacctcagaaagttgtacagcgtgaaatccccgtcc
aaatggtagggaatgggggaagctccgcccattcctactcgcgattttctctggcaaatg
acgtcatccagagatacagtagccaaacatcgtctggaatttcacctcaccaaagacttt
cgtcatattcgttgcatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTATTCTCTGTTTTTTGTTCTCA 416 305 161 Antisense
AAAAGTTATCCAGCCCAATCAGTGC 225 133 218 Antisense
CGTACTGCATCCACCTATCAGTTTC 336 247 247 Antisense
GAGCCCGTCATACTACTGTAGAGCT 619 385 302 Antisense
AGCATTCGTCTCGAGACCTTGGAGC 556 75 329 Antisense
AGTTGTACAGCGTGAAATCCCCGTC 608 63 375 Antisense
AGGGAATGGGGGAAGCTCCGCCCAT 506 57 408 Antisense
ACTCGCGATTTTCTCTGGCAAATGA 279 99 437 Antisense
AACATCGTCTGGAATTTCACCTCAC 609 137 486 Antisense
TTCACCTCACCAAAGACTTTCGTCA 522 687 501 Antisense
GACTTTCGTCATATTCGTTGCATAG 99 373 515 Antisense
Sequence Source Affymetrix Proprietary Database