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[178901_at]

Description F44G3.5 /REP_DB=WormBase Gene ID /WP=CE16036 /TR=O45516 /GB=CAB05515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 18      6grp_cgc > 66      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 6.4
(-3)
A 		29.5
(-0.3)
A 		23.5
(-1)
A 		57.7
(3)
P 		51
B 37.9
(2.2)
A 		26.6
(0.5)
A 		3.3
(-3)
A 		43.5
(3)
P 		40
C 4.7
(-3)
A 		37.9
(-1.2)
A 		13.2
(-2.5)
A 		113.9
(3)
P 		109
avr 16.3
(-2.7) 		31.3
(-1.2) 		13.3
(-3) 		71.7
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 23.8
(-1.2)
A 		2.2
(-3)
A 		44
(0.5)
A 		61.7
(1.9)
A 		74.6
(3)
A 		24.6
(-1.1)
A 		72
B 3.4
(-3)
A 		44.1
(2.4)
A 		48.8
(3)
A 		30.8
(0.6)
A 		24.1
(-0.3)
A 		29.2
(0.4)
A 		45
C 31.5
(0.5)
A 		42.2
(1.8)
A 		37.2
(1.2)
A 		7.4
(-2.4)
A 		2.7
(-3)
A 		52.2
(3)
P 		50
avr 19.6
(-3) 		29.5
(-0.5) 		43.3
(3) 		33.3
(0.5) 		33.8
(0.6) 		35.3
(1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.3
(-3)
A 		6.4
(1)
A 		6.1
(0.7)
A 		8.4
(3)
P 		6
B 12.1
(3)
A 		6.6
(0.1)
A 		0.8
(-3)
A 		9.3
(1.5)
P 		11
C 1.6
(-3)
A 		10.9
(0.2)
A 		4.6
(-2)
A 		19.2
(3)
P 		18
avr 5.3
(-1.9) 		8
(-0) 		3.8
(-3) 		12.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.4
(-2)
A 		0.8
(-3)
A 		9.6
(-0.6)
A 		15.6
(1.1)
A 		22.5
(3)
A 		6
(-1.6)
A 		22
B 1.2
(-3)
A 		14.7
(3)
A 		11.8
(1.7)
A 		8.1
(0.1)
A 		9.8
(0.8)
A 		10.9
(1.3)
A 		14
C 11.7
(0.9)
A 		12.9
(1.3)
A 		9.5
(0.1)
A 		1.5
(-2.8)
A 		0.9
(-3)
A 		17.5
(3)
P 		17
avr 5.8
(-3) 		9.5
(0.9) 		10.3
(1.7) 		8.4
(-0.3) 		11.1
(2.6) 		11.5
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12587
Sequence Type Exemplar sequence
Representative Public ID F44G3.5 NCBI
Target Description F44G3.5 /REP_DB=WormBase Gene ID /WP=CE16036 /TR=O45516 /GB=CAB05515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074655 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-16) (srxa-16) mRNA, complete cds. 11/11 None
GENEFINDER00000003425 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16115575:16116728:-1 11/11 None
F44G3.5 ENSEMBL cdna:known chromosome:CEL140:V:16115575:16116920:-1 gene:F44G3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003415 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16115574-16116920(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-16
Ensembl F44G3.5
Entrez Gene 185755 Entrez gene
SwissProt O45516 EMBL-EBI
WormBase CE38187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05515 Hypothetical protein F44G3.5 [Caenorhabditis elegans] ref|NP_507056.2| Serpentine Receptor, class XA family member (srxa-16) [Caenorhabditis elegans] 1.0E-149
blast CAB05515 Hypothetical protein F44G3.5 [Caenorhabditis elegans] ref|NP_507056.2| Serpentine Receptor, class XA family member (srxa-16) [Caenorhabditis elegans] 1.0E-146
blast CAB05515 Hypothetical protein F44G3.5 [Caenorhabditis elegans] ref|NP_507056.2| Serpentine Receptor, class XA family member (srxa-16) [Caenorhabditis elegans] 1.0E-121
blast CAE17688 Hypothetical protein C08B6.12 [Caenorhabditis elegans] ref|NP_001023631.1| Serpentine Receptor, class XA family member (srxa-18) [Caenorhabditis elegans] 3.0E-95
blast CAE17688 Hypothetical protein C08B6.12 [Caenorhabditis elegans] ref|NP_001023631.1| Serpentine Receptor, class XA family member (srxa-18) [Caenorhabditis elegans] 4.0E-92
blast CAE17688 Hypothetical protein C08B6.12 [Caenorhabditis elegans] ref|NP_001023631.1| Serpentine Receptor, class XA family member (srxa-18) [Caenorhabditis elegans] 6.0E-76
blast T25310 hypothetical protein T26E4.6 - Caenorhabditis elegans 5.0E-66
blast T25310 hypothetical protein T26E4.6 - Caenorhabditis elegans 6.0E-66
blast CAE64735 Hypothetical protein CBG09522 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507056.2 7 5-27,40-62,82-104,117-139,177-196,213-235,250-272
F44G3.5 7 5-27,48-70,96-118,131-153,193-212,229-251,266-288
GENEFINDER00000003425 5 32-54,67-89,129-148,165-187,202-224
Sequence
Target Sequence 
>C. ELEGANS:178901_AT
gaagtttttagctcaatgtggctcaaagtttatatggcagttggatggattgtgctattc
ttccgtcagctgatcatcatagtccctgatgattgctactttaaaatggatttagatcaa
ttccaagttattacattctgtgaaaatttggaagattatgaaatccgattattgattaat
tctataatcagcaaattcattcacatttttctgccatggacggcagttttgctgaattta
atagtttttgtatttctgaaattaagaaagaagaaacatcaaatgaaccggaaaagtttg
gagaattcgttgtttatcaactcgttcgtagtttcattacttttgactacaaactatatt
tataatcatttttatttgatgtttgaaccgacattatcccaacaatctcctgaaattcaa
tcagcatttagcttttttaacttctacggatgctcattcttcaattttgtagtttatttc
ctcctggaccctattaatcggcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTTTAGCTCAATGTGGCTCA 66 337 391 Antisense
GATGGATTGTGCTATTCTTCCGTCA 659 407 434 Antisense
CATAGTCCCTGATGATTGCTACTTT 251 213 468 Antisense
TTCACATTTTTCTGCCATGGACGGC 369 685 590 Antisense
ATGGACGGCAGTTTTGCTGAATTTA 130 53 606 Antisense
ATTCGTTGTTTATCAACTCGTTCGT 528 7 695 Antisense
CTCGTTCGTAGTTTCATTACTTTTG 37 231 711 Antisense
GTTTGAACCGACATTATCCCAACAA 266 449 771 Antisense
CATTATCCCAACAATCTCCTGAAAT 368 215 782 Antisense
AACTTCTACGGATGCTCATTCTTCA 421 139 829 Antisense
CTCCTGGACCCTATTAATCGGCGGA 596 225 871 Antisense
Sequence Source Affymetrix Proprietary Database