[Home] | [Total List]

[178900_s_at]

Description F45D3.4 /REP_DB=WormBase Gene ID /WP=CE10474 /TR=Q20420 /GB=CAB01501.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 59      6grp_total > 87      4grp_total > 23      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3180
1 2 3 4 range
A 4703
(3)
P 		1718.6
(-3)
P 		1698.4
(-3)
P 		3866.1
(1.3)
P 		3005
B 4316
(3)
P 		1827.8
(-2.4)
P 		1561
(-3)
P 		4072.4
(2.5)
P 		2755
C 4740.9
(3)
P 		2152.5
(-2)
P 		1633.5
(-3)
P 		3498.2
(0.6)
P 		3107
avr 4586.6
(3) 		1899.6
(-2.5) 		1631
(-3) 		3812.2
(1.4) 		2956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5416
1 2 3 4 5 6 range
A 1994
(-2.7)
P 		2691.7
(-1.9)
P 		1687.6
(-3)
P 		3614.5
(-0.9)
P 		2749.5
(-1.8)
P 		7103.3
(3)
P 		5416
B 1954.5
(-2.3)
P 		1703.3
(-3)
P 		1688.8
(-3)
P 		2295
(-1.3)
P 		2983.9
(0.7)
P 		3814.5
(3)
P 		2126
C 2566.1
(-1.4)
P 		1705.2
(-3)
P 		2013.1
(-2.4)
P 		2632.9
(-1.3)
P 		3515
(0.4)
P 		4887.6
(3)
P 		3182
avr 2171.5
(-2.4) 		2033.4
(-2.6) 		1796.5
(-3) 		2847.5
(-1.2) 		3082.8
(-0.8) 		5268.5
(3) 		3472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1351
1 2 3 4 range
A 1712.4
(3)
P 		373.1
(-3)
P 		444
(-2.7)
P 		565.9
(-2.1)
P 		1339
B 1376.3
(3)
P 		451.4
(-2.5)
P 		361.7
(-3)
P 		867.8
(-0)
P 		1015
C 1569.4
(3)
P 		618.9
(-2.7)
P 		569.3
(-3)
P 		589.9
(-2.9)
P 		1000
avr 1552.7
(3) 		481.1
(-2.9) 		458.3
(-3) 		674.5
(-1.8) 		1094

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1362
1 2 3 4 5 6 range
A 367.6
(-3)
P 		957.3
(-0.4)
P 		367.5
(-3)
P 		916.7
(-0.6)
P 		829.7
(-1)
P 		1729.4
(3)
P 		1362
B 680.1
(-1.4)
P 		567
(-2.1)
P 		410.1
(-3)
P 		607.9
(-1.8)
P 		1212.3
(1.8)
P 		1422.4
(3)
P 		1012
C 951.2
(-0.7)
P 		520.3
(-3)
P 		512.4
(-3)
P 		529.5
(-2.9)
P 		1137.4
(0.3)
P 		1636.2
(3)
P 		1124
avr 666.3
(-1.8) 		681.5
(-1.7) 		430
(-3) 		684.7
(-1.7) 		1059.8
(0.2) 		1596
(3) 		1166
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14024
Sequence Type Exemplar sequence
Representative Public ID F45D3.4 NCBI
Target Description F45D3.4 /REP_DB=WormBase Gene ID /WP=CE10474 /TR=Q20420 /GB=CAB01501.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028759(11), NM_001028760(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028759 NCBI Caenorhabditis elegans F45D3.4a (F45D3.4) mRNA, complete cds. 11/11 None
NM_001028760 NCBI Caenorhabditis elegans F45D3.4b (F45D3.4) mRNA, complete cds. 9/11 None
SNAP00000028861 ENSEMBL cdna:SNAP chromosome:CEL140:V:12555013:12555754:-1 11/11 None
GENEFINDER00000028868 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12555013:12555754:-1 11/11 None
F45D3.4 ENSEMBL cdna:known chromosome:CEL140:V:12554737:12555817:-1 gene:F45D3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12555012-12555754(-) 100.0 100.0
Public Domain and Genome References
Ensembl F45D3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01501 Hypothetical protein F45D3.4a [Caenorhabditis elegans] ref|NP_001023930.1| F45D3.4a [Caenorhabditis elegans] 1.0E-109
blast CAE75511 Hypothetical protein CBG23525 [Caenorhabditis briggsae] 2.0E-97
blast CAI91164 Hypothetical protein F45D3.4b [Caenorhabditis elegans] ref|NP_001023931.1| F45D3.4b [Caenorhabditis elegans] 3.0E-88
blast CAB01501 Hypothetical protein F45D3.4a [Caenorhabditis elegans] ref|NP_001023930.1| F45D3.4a [Caenorhabditis elegans] 2.0E-82
Sequence
Target Sequence 
>C. ELEGANS:178900_S_AT
aaaccagatgactccttcgatcttgacctgttcctcggtgccatgggagatgggcatttt
gccgatggaaatggaaatgtcgacggagttgttccaatgactccaaagaaatccgagaaa
cttccaggacaaaagaaagtaaaggatgaatttgagcaaccagatggagttgtacccgaa
ttcactggatcttttgttactgaaaatccagaaacagcatctgcctcgactcaaacttcc
gatgaggataccgatgaggattacttcggagaatctaccggtggagctgccgttgctgga
ccaatcaccaatccagctgccacttatctcgagggttctgatttcgagaaagttactcaa
ccatcctgccaaatgctcggatgcactggaccaattccaaacgacggctcttactctgct
ttgtctgctactttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAGATGACTCCTTCGATCTTG 679 125 91 Antisense
TGTTCCTCGGTGCCATGGGAGATGG 38 555 119 Antisense
GTACCCGAATTCACTGGATCTTTTG 137 459 262 Antisense
TCCAGAAACAGCATCTGCCTCGACT 40 589 297 Antisense
TGCCTCGACTCAAACTTCCGATGAG 546 585 312 Antisense
AGAATCTACCGGTGGAGCTGCCGTT 335 71 360 Antisense
CGTTGCTGGACCAATCACCAATCCA 602 247 381 Antisense
TGCCACTTATCTCGAGGGTTCTGAT 231 587 408 Antisense
GAGAAAGTTACTCAACCATCCTGCC 672 389 436 Antisense
AATTCCAAACGACGGCTCTTACTCT 675 177 483 Antisense
CTCTGCTTTGTCTGCTACTTTGGAT 364 231 504 Antisense
Sequence Source Affymetrix Proprietary Database