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[178899_at] 7TM chemoreceptor, sri family

Description T06E6.4 /REP_DB=WormBase Gene ID /WP=CE13319 /TR=O45759 /GB=CAB03314.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 56      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.4
(-3)
A 		5
(-2.3)
A 		23.2
(3)
A 		3.6
(-2.7)
A 		21
B 7.6
(-1.9)
A 		26
(3)
A 		19.1
(1.2)
A 		3.3
(-3)
A 		23
C 6.6
(3)
A 		5.8
(1.7)
A 		5
(0.3)
A 		3
(-3)
A 		4
avr 5.5
(-1.9) 		12.3
(1.3) 		15.8
(3) 		3.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 3.1
(-2.7)
A 		6
(-2)
A 		8.7
(-1.4)
A 		1.6
(-3)
A 		28.3
(3)
A 		26.4
(2.6)
A 		27
B 8.1
(-0.9)
A 		18
(3)
A 		3.7
(-2.7)
A 		4.3
(-2.4)
A 		2.9
(-3)
A 		6.6
(-1.5)
A 		15
C 2.1
(-3)
A 		23.2
(1)
A 		27.2
(1.7)
A 		8.7
(-1.8)
A 		2.9
(-2.9)
A 		34.1
(3)
A 		32
avr 4.4
(-3) 		15.7
(0.8) 		13.2
(-0.1) 		4.9
(-2.8) 		11.4
(-0.7) 		22.4
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-2.6)
A 		1.1
(-2.4)
A 		6.1
(3)
A 		0.5
(-3)
A 		6
B 2.4
(-1.2)
A 		6.4
(3)
A 		4.4
(0.9)
A 		0.7
(-3)
A 		6
C 2.2
(3)
A 		1.7
(1.2)
A 		1.7
(1.2)
A 		0.5
(-3)
A 		2
avr 1.8
(-0.9) 		3.1
(1.3) 		4.1
(3) 		0.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		2.1
(-1.7)
A 		1.9
(-1.9)
A 		0.4
(-3)
A 		8.5
(3)
A 		6.4
(1.4)
A 		8
B 2.8
(-0.8)
A 		6
(3)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		1.2
(-2.6)
A 		2.5
(-1.1)
A 		5
C 0.8
(-3)
A 		7.1
(0.6)
A 		6.9
(0.5)
A 		1.7
(-2.5)
A 		0.9
(-2.9)
A 		11.4
(3)
A 		11
avr 1.4
(-2.7) 		5.1
(1.2) 		3.2
(-0.8) 		1.1
(-3) 		3.5
(-0.5) 		6.8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14712
Sequence Type Exemplar sequence
Representative Public ID T06E6.4 NCBI
Target Description T06E6.4 /REP_DB=WormBase Gene ID /WP=CE13319 /TR=O45759 /GB=CAB03314.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074427(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074427 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-7) (sri-7) mRNA, complete cds. 10/11 None
GENEFINDER00000027755 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15402913:15404406:1 10/11 None
T06E6.4 ENSEMBL cdna:known chromosome:CEL140:V:15402913:15404406:1 gene:T06E6.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027744 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15402912-15404241(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-7
Ensembl T06E6.4
Entrez Gene 188183 Entrez gene
SwissProt O45759 EMBL-EBI
WormBase CE33688 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 0.0
blast CAB01514 Hypothetical protein T09E8.5 [Caenorhabditis elegans] ref|NP_506280.2| Serpentine Receptor, class I family member (sri-6) [Caenorhabditis elegans] 1.0E-143
blast CAA20951 Hypothetical protein Y102A5C.29 [Caenorhabditis elegans] ref|NP_507301.1| Serpentine Receptor, class I family member (sri-9) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506828.2 7 15-37,58-80,95-114,135-152,191-213,242-264,274-296
T06E6.4 7 15-37,58-80,95-114,135-152,191-213,242-264,274-296
GENEFINDER00000027755 7 15-37,58-80,95-114,135-152,191-213,242-264,274-296
Sequence
Target Sequence 
>C. ELEGANS:178899_AT
ggcatactgcagcttcacaaattcagaataacgcaagtaaatttcatctcaaaaagcttg
tgatgatattaactcacatttttccatttctcactgcacttggcacctggaattgtcaaa
tgacttttgatcagaaatatgaatatgtgcggaaaaattatcctcaatgcctgttttggt
tagagtttgacaggtttgaggcatatgactatcaggtgaacccatggattgtccggactg
catgtgcggcgattggatttttaatgataagtacatgctacggaatatggcttggcgtcc
atacaatggttatcctccaacgcctccgcggacacatgtcagtgcagacctaccagatgc
acctaaccgctttaataagcttgggactgcaaatggccacccccacggtatttattcttc
ccgtttatatgttcgtagcagtgattgtcactgacgctgttgacatgcaaagtgagcctc
ttcctatgaaaaccttcagagggatagttttttctaggaatagtatcctgggcgccatgt
ctaatgtcaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATACTGCAGCTTCACAAATTCA 517 537 359 Antisense
TATTAACTCACATTTTTCCATTTCT 634 663 425 Antisense
CTGCACTTGGCACCTGGAATTGTCA 292 237 452 Antisense
ATTATCCTCAATGCCTGTTTTGGTT 325 13 515 Antisense
CAGGTGAACCCATGGATTGTCCGGA 356 207 571 Antisense
TTGTCCGGACTGCATGTGCGGCGAT 104 701 587 Antisense
GATGCACCTAACCGCTTTAATAAGC 457 411 714 Antisense
GCTTGGGACTGCAAATGGCCACCCC 252 307 737 Antisense
TATTCTTCCCGTTTATATGTTCGTA 18 663 771 Antisense
GAGCCTCTTCCTATGAAAACCTTCA 151 385 832 Antisense
TGGGCGCCATGTCTAATGTCAACAC 431 555 887 Antisense
Sequence Source Affymetrix Proprietary Database