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[178898_at]

Description F55C9.3 /REP_DB=WormBase Gene ID /WP=CE18735 /TR=Q9XUY9 /GB=CAB04473.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1671
1 2 3 4 range
A 29.5
(-2.9)
A 		48.3
(-2.8)
A 		4.4
(-3)
A 		1638.6
(3)
P 		1634
B 32.1
(-2.9)
A 		6
(-3)
A 		11.9
(-3)
A 		1142.7
(3)
P 		1137
C 15.7
(-3)
A 		14.6
(-3)
A 		33.1
(-2.9)
A 		1675.1
(3)
P 		1661
avr 25.8
(-3) 		23
(-3) 		16.5
(-3) 		1485.5
(3) 		1469

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 4.5
(-3)
A 		17.3
(-2.3)
A 		61.8
(0.1)
A 		115.5
(3)
P 		78
(1)
A 		9.1
(-2.8)
A 		111
B 11.5
(-3)
A 		34.3
(-1.1)
A 		81.9
(3)
A 		58.2
(1)
A 		52.3
(0.5)
P 		51.5
(0.4)
P 		70
C 3.9
(-3)
A 		5.3
(-2.9)
A 		18.9
(-2.1)
A 		103.9
(3)
P 		36.8
(-1)
A 		56.7
(0.2)
P 		100
avr 6.6
(-3) 		19
(-2.1) 		54.2
(0.3) 		92.5
(3) 		55.7
(0.4) 		39.1
(-0.7) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 10.7
(-2.8)
A 		10.5
(-2.8)
A 		1.1
(-3)
A 		239.9
(3)
P 		239
B 10.2
(-2.8)
A 		1.5
(-3)
A 		2.8
(-3)
A 		243.5
(3)
P 		242
C 5.2
(-3)
A 		4.2
(-3)
A 		11.5
(-2.8)
A 		282.4
(3)
P 		278
avr 8.7
(-2.9) 		5.4
(-3) 		5.1
(-3) 		255.3
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.2
(-1.9)
A 		13.5
(-0.3)
A 		29.3
(3)
P 		23.5
(1.8)
A 		2.2
(-2.7)
A 		29
B 4
(-3)
A 		11.4
(-0.4)
A 		19.9
(2.5)
A 		15.4
(1)
A 		21.3
(3)
P 		19.2
(2.3)
P 		17
C 1.4
(-3)
A 		1.6
(-2.9)
A 		4.8
(-2)
A 		20.9
(3)
P 		11.9
(0.2)
A 		19
(2.4)
P 		20
avr 2.1
(-3) 		6.4
(-1.7) 		12.7
(0.2) 		21.9
(3) 		18.9
(2.1) 		13.5
(0.5) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12584
Sequence Type Exemplar sequence
Representative Public ID F55C9.3 NCBI
Target Description F55C9.3 /REP_DB=WormBase Gene ID /WP=CE18735 /TR=Q9XUY9 /GB=CAB04473.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075351 NCBI Caenorhabditis elegans F55C9.3 (F55C9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000026285 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19289575:19290185:-1 11/11 None
F55C9.3 ENSEMBL cdna:known chromosome:CEL140:V:19289582:19290185:-1 gene:F55C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19289581-19290185(-) 87.7 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.3
Entrez Gene 186291 Entrez gene
SwissProt Q9XUY9 EMBL-EBI
WormBase CE18735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04473 Hypothetical protein F55C9.3 [Caenorhabditis elegans] ref|NP_507752.1| F55C9.3 [Caenorhabditis elegans] 9.0E-83
blast CAB04473 Hypothetical protein F55C9.3 [Caenorhabditis elegans] ref|NP_507752.1| F55C9.3 [Caenorhabditis elegans] 3.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 3.5E-35
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.2E-30
Sequence
Target Sequence 
>C. ELEGANS:178898_AT
gagacgataactgttccaactggaatagacgtgaaaatttcaatcaagaaacacatgcct
aaaaaaaattttggaaatgtcgaagttgtttatcaacacggaagaaggaaaaccggaatc
attcaattatccaacaacgatgcgtatttgatgtttggaccaagacgacaaatgataaca
gtagaagaacatttccgcagacgctacaacgtggagctaagacacccgaaactaagacta
ttccatttcaccaacgagacgcaggcaaaatcaccggtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACGATAACTGTTCCAACTGGAA 641 391 97 Antisense
TTCAATCAAGAAACACATGCCTAAA 275 685 135 Antisense
AACCGGAATCATTCAATTATCCAAC 75 147 207 Antisense
CGATGCGTATTTGATGTTTGGACCA 395 249 234 Antisense
GAAGAACATTTCCGCAGACGCTACA 13 341 280 Antisense
TCCGCAGACGCTACAACGTGGAGCT 161 597 290 Antisense
ACGTGGAGCTAAGACACCCGAAACT 597 95 305 Antisense
GACACCCGAAACTAAGACTATTCCA 364 367 317 Antisense
GACTATTCCATTTCACCAACGAGAC 128 371 332 Antisense
ATTTCACCAACGAGACGCAGGCAAA 312 15 341 Antisense
GACGCAGGCAAAATCACCGGTGGAA 701 379 354 Antisense
Sequence Source Affymetrix Proprietary Database