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[178897_s_at]

Description T26E3.8 /REP_DB=WormBase Gene ID /WP=CE21207 /TR=O18130 /GB=CAB04838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 26.1
(-0.7)
A 		13.4
(-3)
A 		19.3
(-1.9)
A 		47
(3)
A 		34
B 17.5
(-1)
A 		33.7
(3)
A 		28.2
(1.7)
A 		9.2
(-3)
A 		25
C 24.9
(3)
A 		7.9
(-3)
A 		20.2
(1.3)
A 		12.5
(-1.4)
A 		17
avr 22.8
(2.9) 		18.3
(-3) 		22.6
(2.6) 		22.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 37.3
(0.2)
A 		20.9
(-1.6)
A 		30.7
(-0.5)
A 		8.6
(-3)
A 		9
(-3)
A 		62.3
(3)
P 		54
B 33.6
(0.4)
A 		9.3
(-2.5)
A 		10.9
(-2.3)
A 		22.5
(-0.9)
A 		5.3
(-3)
A 		54.8
(3)
P 		50
C 12.9
(-2.1)
A 		36.2
(2.7)
A 		10.4
(-2.6)
A 		36.1
(2.7)
A 		8.6
(-3)
A 		37.8
(3)
P 		29
avr 27.9
(-0.2) 		22.1
(-1) 		17.3
(-1.7) 		22.4
(-1) 		7.6
(-3) 		51.6
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.5
(3)
A 		2.9
(-3)
A 		5
(-1.1)
A 		6.9
(0.6)
A 		7
B 5.6
(0.4)
A 		8.3
(3)
A 		6.5
(1.3)
A 		2
(-3)
A 		6
C 8.2
(3)
A 		2.3
(-2.8)
A 		7
(1.8)
A 		2.1
(-3)
A 		6
avr 7.8
(3) 		4.5
(-1.8) 		6.2
(0.7) 		3.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.9
(-0.8)
A 		7.4
(-0.6)
A 		6.7
(-0.9)
A 		2.2
(-3)
A 		2.7
(-2.8)
A 		15.2
(3)
P 		13
B 11.7
(0.1)
A 		3.1
(-2.7)
A 		2.7
(-2.8)
A 		6
(-1.7)
A 		2.2
(-3)
A 		20.4
(3)
P 		18
C 4.8
(-1.7)
A 		11
(2)
A 		2.6
(-3)
A 		7.3
(-0.2)
A 		2.8
(-2.9)
A 		12.7
(3)
P 		10
avr 7.8
(-0.7) 		7.2
(-1) 		4
(-2.4) 		5.2
(-1.8) 		2.6
(-3) 		16.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178897_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1726
Sequence Type Exemplar sequence
Representative Public ID T26E3.8 NCBI
Target Description T26E3.8 /REP_DB=WormBase Gene ID /WP=CE21207 /TR=O18130 /GB=CAB04838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060803 NCBI Caenorhabditis elegans T26E3.8 (T26E3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000034754 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12666036:12667498:-1 9/11 None
SNAP00000034745 ENSEMBL cdna:SNAP chromosome:CEL140:I:12666106:12667498:-1 9/11 None
T26E3.8 ENSEMBL cdna:known chromosome:CEL140:I:12665952:12667313:-1 gene:T26E3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12665966-12667244(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E3.8
Entrez Gene 173135 Entrez gene
SwissProt O18130 EMBL-EBI
WormBase CE21207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04838 Hypothetical protein T26E3.8 [Caenorhabditis elegans] ref|NP_493204.1| T26E3.8 [Caenorhabditis elegans] 1.0E-132
blast CAB04838 Hypothetical protein T26E3.8 [Caenorhabditis elegans] ref|NP_493204.1| T26E3.8 [Caenorhabditis elegans] 1.0E-119
blast CAB04838 Hypothetical protein T26E3.8 [Caenorhabditis elegans] ref|NP_493204.1| T26E3.8 [Caenorhabditis elegans] 1.0E-98
blast CAB04831 Hypothetical protein T26E3.5 [Caenorhabditis elegans] ref|NP_493206.1| T26E3.5 [Caenorhabditis elegans] 2.0E-12
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 2.0E-12
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 5.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-4
Sequence
Target Sequence 
>C. ELEGANS:178897_S_AT
tatggcagaccgaatgttctatatcggaaacaacattggcaaatttcgagataaaatcag
ttacatattcaaatgcgttaaagtgtatagatatgatattgaagtcaatcacagaaggga
agaagatgtccgccaaattttgaacattttacgctccgtccgttattgtactatttctag
aatgtcctatacaaaccaaagaatatcaggtgaaacgttccaattgttcgctagacttgg
gtcatggagatcctcattgcatgttaatgtgacaaatccacattatacaagagtgcattt
gggggatttgaactatacgaaaatcattttgaatggtattaacatctctaatcaagaatt
gaacgaatttatcggtagatacgatggtggatgctcccgaaagagttatattgaagcaaa
aggaatgagcagcatccttgtaaagtctgagattttgaagtatattaaagctagagaaat
aaaggatggttcagtttccaagtttcacgtaacaaagaattgtcggaccagagacattaa
cttggaagtatttattggggaacactgcgtgcagctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGCAGACCGAATGTTCTATATC 408 655 102 Antisense
AGAAGATGTCCGCCAAATTTTGAAC 434 69 222 Antisense
CTCCGTCCGTTATTGTACTATTTCT 324 233 255 Antisense
AGGTGAAACGTTCCAATTGTTCGCT 136 57 309 Antisense
ATTGTTCGCTAGACTTGGGTCATGG 304 5 324 Antisense
TGGGTCATGGAGATCCTCATTGCAT 654 553 339 Antisense
GTGCATTTGGGGGATTTGAACTATA 275 467 394 Antisense
GATACGATGGTGGATGCTCCCGAAA 302 423 479 Antisense
GAGCAGCATCCTTGTAAAGTCTGAG 41 391 528 Antisense
TCAGTTTCCAAGTTTCACGTAACAA 248 623 592 Antisense
TGGGGAACACTGCGTGCAGCTGCAA 626 551 657 Antisense
Sequence Source Affymetrix Proprietary Database