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[178895_at]

Description R06C7.1 /REP_DB=WormBase Gene ID /WP=CE06244 /TR=Q21770 /GB=CAA95839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_total > 97      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 109.2
(-3)
P 		257.7
(-0.1)
P 		411.3
(3)
P 		338.9
(1.6)
P 		302
B 112.7
(-3)
P 		251.3
(2)
P 		279.3
(3)
P 		274
(2.8)
P 		167
C 133.7
(-3)
P 		158.1
(-2.2)
P 		293.7
(2.4)
P 		312.6
(3)
P 		179
avr 118.5
(-3) 		222.4
(-0) 		328.1
(3) 		308.5
(2.4) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2255
1 2 3 4 5 6 range
A 97.8
(-3)
A 		130
(-2.9)
P 		215.4
(-2.7)
P 		348.6
(-2.3)
P 		1281.7
(0.5)
P 		2130.9
(3)
P 		2033
B 74.9
(-3)
M 		128.7
(-2.9)
P 		182.8
(-2.7)
P 		372
(-2.2)
P 		1233.6
(0.1)
P 		2327.7
(3)
P 		2253
C 72.4
(-3)
A 		193.5
(-2.6)
P 		225
(-2.5)
P 		351.7
(-2)
P 		1364.2
(1.6)
P 		1763.5
(3)
P 		1691
avr 81.7
(-3) 		150.7
(-2.8) 		207.7
(-2.6) 		357.4
(-2.2) 		1293.2
(0.6) 		2074
(3) 		1992
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 39.7
(-3)
P 		55.9
(-1.6)
P 		107.5
(3)
P 		49.6
(-2.1)
P 		68
B 35.9
(-3)
P 		62.1
(2.5)
P 		64.7
(3)
P 		58.4
(1.7)
P 		29
C 44.3
(-3)
P 		45.4
(-2.9)
P 		102.4
(3)
P 		52.7
(-2.1)
P 		58
avr 40
(-3) 		54.5
(-1.3) 		91.5
(3) 		53.6
(-1.4) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 850
1 2 3 4 5 6 range
A 18
(-3)
A 		46.2
(-2.7)
P 		46.9
(-2.7)
P 		88.4
(-2.2)
P 		386.8
(1.4)
P 		518.8
(3)
P 		501
B 26
(-3)
M 		42.9
(-2.9)
P 		44.4
(-2.9)
P 		98.5
(-2.5)
P 		501.2
(0.4)
P 		868
(3)
P 		842
C 26.8
(-3)
A 		59
(-2.7)
P 		57.3
(-2.7)
P 		70.7
(-2.5)
P 		441.5
(1.4)
P 		590.3
(3)
P 		564
avr 23.6
(-3) 		49.4
(-2.8) 		49.5
(-2.8) 		85.9
(-2.4) 		443.2
(1) 		659
(3) 		635
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1791
Sequence Type Exemplar sequence
Representative Public ID R06C7.1 NCBI
Target Description R06C7.1 /REP_DB=WormBase Gene ID /WP=CE06244 /TR=Q21770 /GB=CAA95839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059644 NCBI Caenorhabditis elegans R06C7.1 (R06C7.1) mRNA, complete cds. 11/11 None
SNAP00000036110 ENSEMBL cdna:SNAP chromosome:CEL140:I:7243539:7246730:1 11/11 None
GENEFINDER00000036130 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7243539:7246730:1 11/11 None
R06C7.1 ENSEMBL cdna:known chromosome:CEL140:I:7243515:7246915:1 gene:R06C7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7243469-7246661(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06C7.1
Entrez Gene 172463 Entrez gene
SwissProt Q21770 EMBL-EBI
WormBase CE06244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95839 Hypothetical protein R06C7.1 [Caenorhabditis elegans] ref|NP_492045.1| R06C7.1 [Caenorhabditis elegans] sp|Q21770|GCC7_CAEEL Germ cell expressed protein R06C7.1 0.0
blast AAB54129 Hypothetical protein F55A12.1 [Caenorhabditis elegans] ref|NP_491579.1| F55A12.1 [Caenorhabditis elegans] 0.0
blast CAE66929 Hypothetical protein CBG12321 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 7.2E-53
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178895_AT
tagcccgagctattatccatggttactcgaaagaaatcaaattgattttcatcgtcgtca
ctaaggagcacagttaccgattcttccgtgatcagcttcgttcgggcggcaaagccactg
aaatgaatattcctccgggcattgtcttggataacgctgtcacgaatccggcatgtaagc
agttcttcctgaacggtcacacgactcttcaaggaacagcaaagacaccattgtacactg
ttcttgctgacgactgcaaagctccaatggaccgcctggaggagctgaccttcactttgt
gtcatcatcaccaaattgtttccctgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCCCGAGCTATTATCCATGGTTA 20 649 2336 Antisense
CACAGTTACCGATTCTTCCGTGATC 34 197 2404 Antisense
TTCGTTCGGGCGGCAAAGCCACTGA 618 651 2432 Antisense
TTCCTCCGGGCATTGTCTTGGATAA 151 699 2465 Antisense
GGATAACGCTGTCACGAATCCGGCA 50 509 2484 Antisense
TCCGGCATGTAAGCAGTTCTTCCTG 19 593 2502 Antisense
GTCACACGACTCTTCAAGGAACAGC 33 465 2531 Antisense
GTACACTGTTCTTGCTGACGACTGC 39 461 2568 Antisense
GACGACTGCAAAGCTCCAATGGACC 196 379 2584 Antisense
GAGCTGACCTTCACTTTGTGTCATC 664 385 2617 Antisense
TCATCACCAAATTGTTTCCCTGAGC 214 621 2640 Antisense
Sequence Source Affymetrix Proprietary Database