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[178894_at]

Description C38D9.4 /REP_DB=WormBase Gene ID /WP=CE19730 /TR=Q9XVC2 /GB=CAB03950.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3.5
(-1.7)
A 		10.5
(3)
A 		1.6
(-3)
A 		2
(-2.7)
A 		9
B 2.5
(-3)
A 		5.2
(3)
A 		3.3
(-1.2)
A 		4.4
(1.2)
A 		3
C 1.9
(-3)
A 		6.1
(-2.2)
A 		2.5
(-2.9)
A 		32.5
(3)
A 		31
avr 2.6
(-2.9) 		7.3
(-0.3) 		2.5
(-3) 		13
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.3
(-1)
A 		7.3
(0.8)
A 		1.1
(-2.9)
A 		1
(-3)
A 		3.5
(-1.5)
A 		11
(3)
A 		10
B 5.2
(0.1)
A 		2.8
(-1.6)
A 		9.3
(3)
A 		0.8
(-3)
A 		2.3
(-1.9)
A 		3.4
(-1.2)
A 		9
C 1.8
(-2.7)
A 		5.4
(1.5)
A 		6.2
(2.4)
A 		6.7
(3)
A 		5
(1)
A 		1.5
(-3)
A 		5
avr 3.8
(-0.8) 		5.2
(2.3) 		5.5
(3) 		2.8
(-3) 		3.6
(-1.2) 		5.3
(2.6) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.3
(0)
A 		2.3
(3)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		2
B 0.8
(-3)
A 		1.3
(3)
A 		0.8
(-3)
A 		0.9
(-1.8)
A 		1
C 0.6
(-3)
A 		1.7
(-1.7)
A 		0.9
(-2.6)
A 		5.5
(3)
A 		5
avr 0.9
(-2.2) 		1.8
(1.4) 		0.7
(-3) 		2.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(-1.6)
A 		2.6
(2.8)
A 		0.2
(-3)
A 		0.3
(-2.8)
A 		1
(-1.1)
A 		2.7
(3)
A 		3
B 1.8
(1.6)
A 		0.9
(-1)
A 		2.3
(3)
A 		0.2
(-3)
A 		0.9
(-1)
A 		1.3
(0.1)
A 		2
C 0.7
(-1.9)
A 		1.6
(3)
A 		1.6
(3)
A 		1.4
(1.9)
A 		1.6
(3)
A 		0.5
(-3)
A 		1
avr 1.1
(-0.3) 		1.7
(3) 		1.4
(1.4) 		0.6
(-3) 		1.2
(0.3) 		1.5
(1.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14321
Sequence Type Exemplar sequence
Representative Public ID C38D9.4 NCBI
Target Description C38D9.4 /REP_DB=WormBase Gene ID /WP=CE19730 /TR=Q9XVC2 /GB=CAB03950.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075051 NCBI Caenorhabditis elegans C38D9.4 (C38D9.4) mRNA, complete cds. 11/11 None
C38D9.4 ENSEMBL cdna:known chromosome:CEL140:V:17587369:17588452:1 gene:C38D9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039594 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17587368-17588452(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38D9.4
Entrez Gene 183315 Entrez gene
SwissProt Q9XVC2 EMBL-EBI
WormBase CE19730 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03950 Hypothetical protein C38D9.4 [Caenorhabditis elegans] ref|NP_507452.1| C38D9.4 [Caenorhabditis elegans] 0.0
blast CAB07204 Hypothetical protein F47H4.2 [Caenorhabditis elegans] ref|NP_507396.2| F47H4.2 [Caenorhabditis elegans] 1.0E-139
blast CAB07212 Hypothetical protein Y20C6A.1 [Caenorhabditis elegans] emb|CAA16306.3| Hypothetical protein Y20C6A.1 [Caenorhabditis elegans] ref|NP_507397.3| Y20C6A.1 [Caenorhabditis elegans] 7.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.3E-31
Sequence
Target Sequence 
>C. ELEGANS:178894_AT
gtgaacacagtacgtttggtcggaattgatatgaagatgatgaccagaatactgtcgtat
ttggatgaaaaaatgctaaatgcaattaacctggtgtatgatgcagaaagcagaaatgaa
agagaagaacttgacactggtcgaatggtgaagctggcacaatggaaaaacgccaaaata
cttagtgttgaaaaatgtgctgtgtcgtttccaattgaaagtattggacatttttacaaa
gtaaaactttgtttccgtcaaattaccatccaagatttactttatctgaaggagattttt
atcaattcatgtgtccctcgaaaattcaaaattcaaagtagatcgtttgatgcagaaaat
ttggatgaaacttttggcctccctttcgtgaccgaaaataatgtgcagcgtaaaatgtgg
gtattcagagtgctagtgaacaggcggagagtagttcaactagactatttggagcgtata
gcaggtgcgagggagataacttgtttcaaatttacacattccgaagtgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAACACAGTACGTTTGGTCGGAA 53 463 490 Antisense
AGAACTTGACACTGGTCGAATGGTG 40 65 615 Antisense
ATGTGCTGTGTCGTTTCCAATTGAA 469 49 684 Antisense
ATTACCATCCAAGATTTACTTTATC 113 13 751 Antisense
TTTTATCAATTCATGTGTCCCTCGA 55 677 786 Antisense
TTGGATGAAACTTTTGGCCTCCCTT 450 707 850 Antisense
AATGTGGGTATTCAGAGTGCTAGTG 394 163 903 Antisense
GAGTGCTAGTGAACAGGCGGAGAGT 169 401 917 Antisense
TTTGGAGCGTATAGCAGGTGCGAGG 279 665 957 Antisense
GGTGCGAGGGAGATAACTTGTTTCA 360 373 973 Antisense
CAAATTTACACATTCCGAAGTGCCA 452 193 996 Antisense
Sequence Source Affymetrix Proprietary Database