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[178893_at]

Description C08F8.4 /REP_DB=WormBase Gene ID /WP=CE05251 /TR=Q17826 /GB=CAA97423.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 39.7
(1.4)
A 		18.5
(-3)
A 		35.6
(0.6)
A 		47.3
(3)
A 		29
B 14
(-1.6)
A 		8
(-3)
A 		33.9
(3)
A 		27.4
(1.5)
A 		26
C 20.2
(1.6)
A 		23.9
(3)
A 		7.9
(-3)
A 		14.6
(-0.5)
A 		16
avr 24.6
(0.6) 		16.8
(-3) 		25.8
(1.2) 		29.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 32.6
(-1.8)
A 		12.5
(-2.9)
A 		36.5
(-1.6)
A 		60.3
(-0.3)
A 		11.3
(-3)
A 		121.2
(3)
P 		110
B 18.1
(-1.9)
A 		7.9
(-2.7)
A 		3.7
(-3)
A 		43.9
(0.2)
A 		68.1
(2.1)
A 		79.5
(3)
P 		76
C 5.4
(-3)
A 		36.1
(0.2)
A 		8.3
(-2.7)
A 		7.2
(-2.8)
A 		55.6
(2.2)
A 		62.9
(3)
A 		58
avr 18.7
(-2.8) 		18.8
(-2.8) 		16.2
(-3) 		37.1
(-1.3) 		45
(-0.6) 		87.9
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.4
(3)
A 		4
(-3)
A 		9.3
(0.1)
A 		6.9
(-1.3)
A 		10
B 4.5
(-0.4)
A 		2
(-3)
A 		7.8
(3)
A 		5.8
(0.9)
A 		6
C 6.7
(2.7)
A 		6.9
(3)
A 		2.7
(-2.7)
A 		2.5
(-3)
A 		4
avr 8.5
(3) 		4.3
(-3) 		6.6
(0.3) 		5.1
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6
(-2.4)
A 		4.4
(-2.8)
A 		7.9
(-2)
A 		15.3
(-0.3)
A 		3.4
(-3)
A 		29.5
(3)
P 		26
B 6.3
(-1.9)
A 		2.6
(-2.6)
A 		0.9
(-3)
A 		11.6
(-0.8)
A 		27.7
(2.6)
A 		29.6
(3)
P 		29
C 2
(-2.8)
A 		11
(-0.1)
A 		2.1
(-2.8)
A 		1.4
(-3)
A 		18
(2.1)
A 		21.1
(3)
A 		20
avr 4.8
(-2.7) 		6
(-2.4) 		3.6
(-3) 		9.4
(-1.5) 		16.4
(0.3) 		26.7
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9505
Sequence Type Exemplar sequence
Representative Public ID C08F8.4 NCBI
Target Description C08F8.4 /REP_DB=WormBase Gene ID /WP=CE05251 /TR=Q17826 /GB=CAA97423.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069690 NCBI Caenorhabditis elegans C08F8.4 (C08F8.4) mRNA, complete cds. 11/11 None
SNAP00000012976 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11157121:11159433:-1 11/11 None
GENEFINDER00000012988 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11157121:11159433:-1 11/11 None
C08F8.4 ENSEMBL cdna:known chromosome:CEL140:IV:11157121:11159433:-1 gene:C08F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11157126-11159439(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F8.4
Entrez Gene 182414 Entrez gene
SwissProt Q17826 EMBL-EBI
WormBase CE05251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97423 Hypothetical protein C08F8.4 [Caenorhabditis elegans] ref|NP_502091.1| C08F8.4 [Caenorhabditis elegans] 0.0
blast CAE57410 Hypothetical protein CBG00365 [Caenorhabditis briggsae] 0.0
blast CAE68838 Hypothetical protein CBG14799 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 1.2E-81
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 1.0E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502091.1 9 35-54,67-89,109-126,133-155,252-271,284-306,385-407,428-450,465-484
C08F8.4 9 35-54,67-89,109-126,133-155,252-271,284-306,385-407,428-450,465-484
SNAP00000012976 9 35-54,67-89,109-126,133-155,233-252,265-287,366-388,409-431,446-465
GENEFINDER00000012988 9 35-54,67-89,109-126,133-155,233-252,265-287,366-388,409-431,446-465
Sequence
Target Sequence 
>C. ELEGANS:178893_AT
gaatatttggactgttgcctggctccggcgagttgtctacgagagggttgaaggcccata
ccgtacccttgcagtttacgtgacgggcgctgcgtggcacgggctggccgttggatatta
tttctcatttttgacaagtgctcttttcactttgtcggcggctacgttccgtcgttgcat
gcgtcaccgtttcttgggcaactcaatgcacaaactgatgtatgatattttcggaatgct
tgtgtcgaaattcgccatcggatatattcattggccattctacgtcatgcatttctggcc
cagtctatttatgtatcgaaaattgcttatgattcctcactttattgcattattcatcta
tctttaccttccacaaatcttctcaccacaaccgaaaagcaagataactggaccgaatgc
ttctgctacatctgtaaatactgatagagtaagtcgcgtgatacaaacgaaaaagctaat
atccgaaatctctcagcgaagctcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATTTGGACTGTTGCCTGGCTC 381 325 1080 Antisense
GCTCCGGCGAGTTGTCTACGAGAGG 295 299 1101 Antisense
GAGAGGGTTGAAGGCCCATACCGTA 301 389 1120 Antisense
CATACCGTACCCTTGCAGTTTACGT 447 209 1136 Antisense
CACCGTTTCTTGGGCAACTCAATGC 504 199 1264 Antisense
TTCATTGGCCATTCTACGTCATGCA 457 687 1346 Antisense
GTCATGCATTTCTGGCCCAGTCTAT 49 461 1363 Antisense
GATTCCTCACTTTATTGCATTATTC 618 433 1410 Antisense
GCATTATTCATCTATCTTTACCTTC 62 309 1426 Antisense
TAACTGGACCGAATGCTTCTGCTAC 413 639 1484 Antisense
CGAAATCTCTCAGCGAAGCTCTTCC 244 253 1563 Antisense
Sequence Source Affymetrix Proprietary Database