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[178891_at]

Description D2089.3 /REP_DB=WormBase Gene ID /WP=CE00938 /TR=Q18998 /GB=CAA85410.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 92      6grp_total > 97      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 260.6
(-0.2)
P 		197.9
(-3)
P 		331.2
(3)
P 		306.4
(1.9)
P 		133
B 310.4
(1)
P 		216
(-2.9)
P 		213.8
(-3)
P 		358.6
(3)
P 		145
C 360.4
(3)
P 		184.8
(-3)
P 		219.8
(-1.8)
P 		318.7
(1.6)
P 		176
avr 310.5
(2.2) 		199.6
(-3) 		254.9
(-0.4) 		327.9
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 338.5
(3)
P 		194.5
(-3)
P 		260.5
(-0.3)
P 		232.3
(-1.4)
P 		338.9
(3)
P 		339.3
(3)
P 		145
B 228.8
(-1.8)
P 		193.8
(-3)
P 		213.5
(-2.3)
P 		300.8
(0.8)
P 		280.7
(0.1)
P 		363.2
(3)
P 		169
C 195
(-3)
P 		228.4
(-1.9)
P 		264.8
(-0.8)
P 		267.9
(-0.7)
P 		312
(0.8)
P 		382
(3)
P 		187
avr 254.1
(-1.1) 		205.6
(-3) 		246.3
(-1.4) 		267
(-0.6) 		310.5
(1) 		361.5
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 94.9
(3)
P 		43
(-3)
P 		86.6
(2)
P 		44.9
(-2.8)
P 		52
B 99
(3)
P 		53.3
(-2.5)
P 		49.5
(-3)
P 		76.4
(0.3)
P 		50
C 119.3
(3)
P 		53.1
(-3)
P 		76.6
(-0.9)
P 		53.7
(-2.9)
P 		66
avr 104.4
(3) 		49.8
(-3) 		70.9
(-0.7) 		58.3
(-2.1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 62.4
(-2.3)
P 		69.2
(-1.4)
P 		56.7
(-3)
P 		58.9
(-2.7)
P 		102.3
(3)
P 		82.6
(0.4)
P 		46
B 79.6
(-1)
P 		64.5
(-2.1)
P 		51.8
(-3)
P 		79.7
(-1)
P 		114.1
(1.5)
P 		135.4
(3)
P 		84
C 72.3
(-1.5)
P 		69.7
(-1.7)
P 		67.4
(-1.9)
P 		53.9
(-3)
P 		101
(0.8)
P 		127.9
(3)
P 		74
avr 71.4
(-1.6) 		67.8
(-2) 		58.6
(-3) 		64.2
(-2.4) 		105.8
(2) 		115.3
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3322
Sequence Type Exemplar sequence
Representative Public ID D2089.3 NCBI
Target Description D2089.3 /REP_DB=WormBase Gene ID /WP=CE00938 /TR=Q18998 /GB=CAA85410.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063902 NCBI Caenorhabditis elegans D2089.3 (D2089.3) mRNA, complete cds. 11/11 None
GENEFINDER00000043972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10662219:10664797:-1 11/11 None
D2089.3 ENSEMBL cdna:known chromosome:CEL140:II:10662219:10664797:-1 gene:D2089.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043962 6/11 Cross Hyb Matching Probes None
SNAP00000043963 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10662215-10664794(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2089.3
Entrez Gene 183962 Entrez gene
SwissProt Q18998 EMBL-EBI
WormBase CE00938 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85410 Hypothetical protein D2089.3 [Caenorhabditis elegans] ref|NP_496303.1| D2089.3 [Caenorhabditis elegans] 1.0E-159
blast AAZ86783 IP04007p [Drosophila melanogaster] gb|AAF54269.1| CG11755-PA [Drosophila melanogaster] ref|NP_649815.1| CG11755-PA [Drosophila melanogaster] 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:178891_AT
gtcaattcggaactcggtgctggcatggagagtcgtgtgcgagttgtgtctgttgtggag
aatgtgtcgacgaggaatttgtgtgcaactcgccacctggatccactgatctctgtgtca
tctacgaaacggtttcaattcacacggatcttgaaaaacaaagaaagccagcaagttcaa
acagtttgccaagcgattttccagatatttcaatgaacgagccgcagcaaccttcaacat
ctgaaaatgccactgcagtgacaagtgaagagcaaccacaacttattgatccatttatcg
attttgaatgccacgtgtgtcatttaaaagagagaacattgttcggagaacttaaagtta
ttgatggacgctacgattctccggtctactttatgagggatccatttaagccgccatccc
gtgatcgggccaagaagccgtgtctcaacgatttcctggtactcggaactccatgctctg
cttgcaatcaacccgtctgcatgtcagatgcttgttcactgtttttcggagccaattttt
gtgctccgtgtgttagtagagagcgtcgccgatttccacctcaacttattcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATTCGGAACTCGGTGCTGGCA 51 463 194 Antisense
AGGAATTTGTGTGCAACTCGCCACC 293 55 266 Antisense
GATCCACTGATCTCTGTGTCATCTA 10 417 293 Antisense
ACGATTCTCCGGTCTACTTTATGAG 212 93 566 Antisense
ATGAGGGATCCATTTAAGCCGCCAT 31 41 586 Antisense
AGAAGCCGTGTCTCAACGATTTCCT 642 73 626 Antisense
GATTTCCTGGTACTCGGAACTCCAT 231 427 643 Antisense
TGCAATCAACCCGTCTGCATGTCAG 237 577 676 Antisense
AGATGCTTGTTCACTGTTTTTCGGA 396 67 699 Antisense
AGTAGAGAGCGTCGCCGATTTCCAC 154 63 748 Antisense
CGATTTCCACCTCAACTTATTCGGG 219 65 763 Antisense
Sequence Source Affymetrix Proprietary Database