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[178889_at]

Description T04A8.4 /REP_DB=WormBase Gene ID /WP=CE01073 /TR=Q22133 /GB=CAA84722.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 75      6grp_total > 33      4grp_total > 02      6grp_cgc > 80      6grp_high1_sub > De      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11000
1 2 3 4 range
A 990.2
(-2.8)
P 		620.9
(-3)
P 		657.3
(-3)
P 		11497.9
(3)
P 		10877
B 934.6
(-2.8)
P 		572.7
(-3)
P 		632.1
(-3)
P 		10710.5
(3)
P 		10138
C 1218.6
(-2.6)
P 		782.3
(-2.8)
P 		498.3
(-3)
P 		10528.2
(3)
P 		10030
avr 1047.8
(-2.7) 		658.6
(-3) 		595.9
(-3) 		10912.2
(3) 		10316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 798.3
(0.5)
P 		877.3
(1.9)
P 		936.7
(3)
P 		750.4
(-0.4)
P 		761.6
(-0.2)
P 		606
(-3)
P 		331
B 1194.9
(3)
P 		885.2
(-0.8)
P 		1135.3
(2.3)
P 		710.1
(-3)
P 		867.8
(-1)
P 		840
(-1.4)
P 		485
C 983.7
(1.2)
P 		826.2
(-1.7)
P 		861.7
(-1)
P 		1082.8
(3)
P 		753.7
(-3)
P 		893.3
(-0.5)
P 		329
avr 992.3
(3) 		862.9
(-0.7) 		977.9
(2.6) 		847.8
(-1.1) 		794.4
(-2.6) 		779.8
(-3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2148
1 2 3 4 range
A 360.5
(-2.1)
P 		134.8
(-3)
P 		171.8
(-2.9)
P 		1683.1
(3)
P 		1548
B 298
(-2.6)
P 		141.4
(-3)
P 		146.5
(-3)
P 		2282.4
(3)
P 		2141
C 403.4
(-2.1)
P 		224.9
(-2.8)
P 		173.7
(-3)
P 		1775.2
(3)
P 		1602
avr 354
(-2.3) 		167
(-3) 		164
(-3) 		1913.6
(3) 		1750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 147.2
(-3)
P 		312
(3)
P 		204
(-0.9)
P 		190.3
(-1.4)
P 		229.8
(0)
P 		147.5
(-3)
P 		165
B 415.8
(3)
P 		294.7
(-0.2)
P 		275.7
(-0.7)
P 		188.1
(-3)
P 		352.6
(1.3)
P 		313.2
(0.3)
P 		228
C 364.6
(3)
P 		252.1
(-1.6)
P 		219.3
(-2.9)
P 		217.7
(-3)
P 		243.9
(-1.9)
P 		299.1
(0.3)
P 		147
avr 309.2
(3) 		286.3
(1.8) 		233
(-1.1) 		198.7
(-3) 		275.4
(1.2) 		253.3
(-0) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6177
Sequence Type Exemplar sequence
Representative Public ID T04A8.4 NCBI
Target Description T04A8.4 /REP_DB=WormBase Gene ID /WP=CE01073 /TR=Q22133 /GB=CAA84722.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065556 NCBI Caenorhabditis elegans T04A8.4 (T04A8.4) mRNA, complete cds. 11/11 None
GENEFINDER00000041111 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4681961:4687158:-1 11/11 None
SNAP00000041091 ENSEMBL cdna:SNAP chromosome:CEL140:III:4682737:4687158:-1 11/11 None
T04A8.4 ENSEMBL cdna:known chromosome:CEL140:III:4685315:4687158:-1 gene:T04A8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4685314-4687158(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04A8.4
Entrez Gene 188039 Entrez gene
SwissProt Q22133 EMBL-EBI
WormBase CE01073 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636461_AT dm
DROSGENOME1:153371_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA84726 Hypothetical protein T04A8.3 [Caenorhabditis elegans] ref|NP_497956.1| T04A8.3 [Caenorhabditis elegans] 0.0
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 0.0
blast CAA84722 Hypothetical protein T04A8.4 [Caenorhabditis elegans] ref|NP_497957.1| T04A8.4 [Caenorhabditis elegans] 1.0E-169
blast CAA84655 Hypothetical protein F10F2.5 [Caenorhabditis elegans] ref|NP_497947.2| F10F2.5 [Caenorhabditis elegans] 1.0E-169
blast CAA84722 Hypothetical protein T04A8.4 [Caenorhabditis elegans] ref|NP_497957.1| T04A8.4 [Caenorhabditis elegans] 1.0E-159
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 1.0E-139
blast CAE71158 Hypothetical protein CBG18014 [Caenorhabditis briggsae] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:178889_AT
ggaatgctgattcgtgctcggaaatatggtcttgtacactttgaaggagaaatgttatat
caaagacaagatgacgagaagataatcacaatgttgatgagtcttcaagaaattcgagaa
agtttgacagcttctggagatcctgcaaattgcattcaaattcgtcgcaattcagaacct
gttgcatttgtgcctccagtatctaaagaagctcctagacctcgaccgataagaagtgat
tcagttacatcttcaaaagcaaaattcgaagccccgccaccaccaaacacagattctctt
cccgttcagggtagacccaagaagccatggacaccaaaagacacatcaaaagcccctatt
catctcattcgcagaatgcgtttgaaaattttcatgggtttatgccttttgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGCTGATTCGTGCTCGGAAAT 314 533 325 Antisense
GACAGCTTCTGGAGATCCTGCAAAT 96 369 450 Antisense
AATTCGTCGCAATTCAGAACCTGTT 529 177 483 Antisense
GCATTTGTGCCTCCAGTATCTAAAG 317 309 508 Antisense
GCTCCTAGACCTCGACCGATAAGAA 272 297 535 Antisense
CACCACCAAACACAGATTCTCTTCC 132 203 602 Antisense
GATTCTCTTCCCGTTCAGGGTAGAC 612 429 616 Antisense
GTAGACCCAAGAAGCCATGGACACC 528 455 635 Antisense
GACACATCAAAAGCCCCTATTCATC 155 367 664 Antisense
CCCCTATTCATCTCATTCGCAGAAT 610 261 677 Antisense
TTCATGGGTTTATGCCTTTTGTGCT 610 687 715 Antisense
Sequence Source Affymetrix Proprietary Database